MuSeqBox Search Results:

Queries may contain alternatively spliced transcripts:

BLASTx: First 3 hits selected, which may contain alternatively spliced transcripts (pstyle:4)
        Selection Criteria: at least 40 nucleotide segment insertion (i.e., indel >=40)

QueryID            SubjectID     QLen  HSP   HLen  CovQ    Qx    Qy    Sx    Sy  SLen  CovS   Pid   Psi NGap Frame  Score  Eval    Db  Annotation                           Source
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
AI600608           168511         347  1/2     75  21.6   275   201   241   265   294   8.5  72.0  84.0    0    -1   40.6  5e-19   gb  protein cdc2 kinase                  Zea mays
AI600608           168511         347  2/2     87  25.1   109    23   266   294   294   9.9  96.6 100.0    0    -2   60.5  5e-19   gb  protein cdc2 kinase                  Zea mays
AI600608           20343          347  1/2     75  21.6   275   201   241   265   294   8.5  72.0  80.0    0    -1   38.7  1e-18   emb Rcdc2-1                              Oryza sativa
AI600608           20343          347  2/2     87  25.1   109    23   266   294   294   9.9  96.6 100.0    0    -2   60.9  1e-18   emb Rcdc2-1                              Oryza sativa
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Database information:
  Number of letters:  11,685, Number of sequences:   28
 BLAST information: gapped alignment BLASTx
  Lambda=0.318, K=0.135, H=0.401; Gapped: Lambda=0.270, K=0.0470, H=0.230
  Matrix: BLOSUM62; Gap Penalties: Existence: 11, Extension: 1