Experimentally identified Arabidopsis snRNAs
BLAST against Arabidopsis genome
| snRNAs |
From ecotype |
| atU1a | Columbia |
| atU2.2, atU2.3, atU2.4, atU2.5, atU2.7, atU2.9 | Benscheim |
| atU2.6 | Landsberg |
| atU4.1, atU4.2, atU4.3 | Landsberg |
| atU5.1 | Benscheim Be-O |
| atU6.1, atU6.26, atU6.29 | Landsberg |
The best hit for each snRNA in ecotype columbia was shown here:
BLASTN 2.1.2 [Oct-19-2000]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|17660|emb|X53175.1|ATU1ASNRN A.thaliana U1a snRNA
(819 letters)
Database: /DATA/GENOME_NEW/Arath/ATGall.fsa
7 sequences; 119,769,761 total letters
Searching......done Score E
Sequences producing significant alignments: (bits) Value
gi|30698605|ref|NC_003076.4| Arabidopsis thaliana chromosom... 815 0.0
>gi|30698605|ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complete sequence
Length = 26992728
Score = 815 bits (411), Expect = 0.0
Identities = 432/435 (99%), Gaps = 3/435 (0%)
Strand = Plus / Minus
Query: 388 ttatagtatgcacttca-tgggcctagag-acatatgggctatggctcatgtgtataaca 445
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 19903515 ttatagtatgcacttcaatgggcctagaggacatatgggctatggctcatgtgtataaca 19903456
Query: 446 taaa-ctcatctcgttaaaaagagaccaataggtgtgtgagatgtgttaatttgcagagt 504
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19903455 taaaactcatctcgttaaaaagagaccaataggtgtgtgagatgtgttaatttgcagagt 19903396
Query: 505 cccacatcgctaagacctgaaagaatgattgaggaagcagagtataactgaagatgtgga 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19903395 cccacatcgctaagacctgaaagaatgattgaggaagcagagtataactgaagatgtgga 19903336
Query: 565 cagtctgtgaaaattacttacctggacggggtcaacttgtgatcaataagacgagtggcc 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19903335 cagtctgtgaaaattacttacctggacggggtcaacttgtgatcaataagacgagtggcc 19903276
Query: 625 taggctagtgacctccattgcacataacggaggggtgcttagcttaaggtctccccaagt 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19903275 taggctagtgacctccattgcacataacggaggggtgcttagcttaaggtctccccaagt 19903216
Query: 685 gggagagcctgcgtcattatttgtggcagagggggcctgcgttcgcgcggtccctaccat 744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19903215 gggagagcctgcgtcattatttgtggcagagggggcctgcgttcgcgcggtccctaccat 19903156
Query: 745 tctttttacatgaaacctttgttaaataaagctgtaaaaggtaatttcttattacgaatt 804
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19903155 tctttttacatgaaacctttgttaaataaagctgtaaaaggtaatttcttattacgaatt 19903096
Query: 805 gtaagtttcgaattc 819
|||||||||||||||
Sbjct: 19903095 gtaagtttcgaattc 19903081
Score = 482 bits (243), Expect = e-135
Identities = 278/283 (98%), Gaps = 5/283 (1%)
Strand = Plus / Minus
Query: 1 gaattcaacaacaaatggaatcagaatcgtaatatcaaccctaaacaaatggaatcga-c 59
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 19903924 gaattcaacaacaaatggaatcagaatcgtaatatcaaccctaaacaaatggaatcgagc 19903865
Query: 60 ttcgattttgaaattttcgtatttctaggtcaagacagcaaagaagagtcaatttcgcgt 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19903864 ttcgattttgaaattttcgtatttctaggtcaagacagcaaagaagagtcaatttcgcgt 19903805
Query: 120 actgaatagaaggtgtaagatttagaaaagtacctaattcagacgacgag-atcgccatg 178
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 19903804 actgaatagaaggtgtaagatttagaaaagtacctaattcagacgacgagaatcgccatg 19903745
Query: 179 gaagagagaaggagaagctgatcagttttgtagtcgtagtactaaagtaggtgattgctg 238
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 19903744 gaagagagaaggagaagctgatcagttttgtagtcgtagtactaaagtaggtga-tgctg 19903686
Query: 239 aaccattttagagttaagct-aaccttgcgt-aatctacagta 279
|||||||||||||||||||| |||||||||| |||||||||||
Sbjct: 19903685 aaccattttagagttaagctaaaccttgcgtaaatctacagta 19903643
BLASTN 2.1.2 [Oct-19-2000]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|17661|emb|X06473.1|ATU22 Arabidopsis thaliana U2 RNA
gene (U2.2)
(848 letters)
Database: /DATA/GENOME_NEW/Arath/ATGall.fsa
7 sequences; 119,769,761 total letters
Searching......done Score E
Sequences producing significant alignments: (bits) Value
gi|30698537|ref|NC_003074.4| Arabidopsis thaliana chromosom... 1431 0.0
>gi|30698537|ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complete sequence
Length = 23470805
Score = 1431 bits (722), Expect = 0.0
Identities = 831/860 (96%), Gaps = 23/860 (2%)
Strand = Plus / Plus
Query: 7 tatattgatgaagccatgtt-aacgcaattctgtatgagtcagagcatcagtgcatcaat 65
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct: 21357327 tatattgatgaagccatgtttaacgcaattctatatgagtcagagcatcagtgcatcaat 21357386
Query: 66 tca-------gaaaaagttcctccgtttttgctttgaagattctttctcaagtttc-atc 117
||| |||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 21357387 tcacagagcagaaaaagttcctccgtttttgctttgaagattctttctcaagtttccatc 21357446
Query: 118 tttcttcttctgggtttacatagttctgtgaaccacagactgtgatcagtggcaacgaac 177
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 21357447 tttcttcttctgggtttacatagttctgtgaatcacagactgtgatcagtggcaacgaac 21357506
Query: 178 acagagaacaaagatgcattaaaagacaaatttattcattgttttgtattgatagttcat 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21357507 acagagaacaaagatgcattaaaagacaaatttattcattgttttgtattgatagttcat 21357566
Query: 238 atgtaattgattaaagaagaaatatgcgtaagagaagactaaagagtacatttggctaaa 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21357567 atgtaattgattaaagaagaaatatgcgtaagagaagactaaagagtacatttggctaaa 21357626
Query: 298 cccttttttaaaagtcccacatcgacaagctagggatcgttggtcataagctttgtagta 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21357627 cccttttttaaaagtcccacatcgacaagctagggatcgttggtcataagctttgtagta 21357686
Query: 358 taaataagaagctgagccattcgttcaattcatacctttctcggccttttggctaagatc 417
|||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct: 21357687 taaataagaagctgagccattcgttctaatcatacctttctcggccttttggctaagatc 21357746
Query: 418 aagtgtagtatctgttcttatcagtttaatatctgatatgtgggccatcggctcacacga 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21357747 aagtgtagtatctgttcttatcagtttaatatctgatatgtgggccatcggctcacacga 21357806
Query: 478 tattaactctatcttttaagggagaaagcccgctatgatagcttgctatctgggcttcca 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21357807 tattaactctatcttttaagggagaaagcccgctatgatagcttgctatctgggcttcca 21357866
Query: 538 cgagtcgcccatgcgttgcactactgcacgggcctggctcaacccgccaaactagaagtg 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21357867 cgagtcgcccatgcgttgcactactgcacgggcctggctcaacccgccaaactagaagtg 21357926
Query: 598 aaacttttaaaattttagtcacttttgatgtttagtttttaaaaatgatgtaggattctt 657
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 21357927 aaacttttaaaattttagtcacttttgatgtttagttttt-aaaatgatgtaggattctt 21357985
Query: 658 tatcattcaaag---------tccaaaatatacgacaagtaaaaatctgtgaagtagaat 708
|||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct: 21357986 tatcattcaaagtccaaaacatccaaaatatacgacaagtaaaaatctgtgaagta-aat 21358044
Query: 709 atatgaacttttgcttgtctctggcaaaaatcgtgaatggtaatgtttcagactcaagcc 768
|||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct: 21358045 atatgaacttttgcttgtctctggcaaaaatc-tgaatggtaatgtttcagactgaagcc 21358103
Query: 769 aaaatggcattggcattgtctctgcgtcattgtgtgtctcatctgcgatctacagtttga 828
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 21358104 aaaatggcattggcattgtctctgcgtca-tgtgtgtctcatctgcgatctacagtttga 21358162
Query: 829 tccgataatttgcagaattc 848
| |||||||||||||||||
Sbjct: 21358163 t-ggataatttgcagaattc 21358181
BLASTN 2.1.2 [Oct-19-2000]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|17662|emb|X06474.1|ATU23 Arabidopsis thaliana U2 RNA
gene (U2.3)
(867 letters)
Database: /DATA/GENOME_NEW/Arath/ATGall.fsa
7 sequences; 119,769,761 total letters
Searching......done Score E
Sequences producing significant alignments: (bits) Value
gi|30698537|ref|NC_003074.4| Arabidopsis thaliana chromosom... 1554 0.0
>gi|30698537|ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complete sequence
Length = 23470805
Score = 1554 bits (784), Expect = 0.0
Identities = 853/871 (97%), Gaps = 5/871 (0%)
Strand = Plus / Minus
Query: 1 gaattcagtatcgagatacgttacagcatctcgaatctccttagcgatcttcaatcttac 60
||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 21409109 gaattcagtatgcagatacgttacagcatctgcaatctccttagcgatcttcaatcttac 21409050
Query: 61 actccaagccaatggcttgattacctcccccgcacctcctatataggcaagacgtccctt 120
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 21409049 actccaagccaatggcttgattacctcccccgcacctcctatataggcaagagctccctt 21408990
Query: 121 ttctgggtattcacacacgagaaccggacgaggaaactctagacaacaccccaagagctt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21408989 ttctgggtattcacacacgagaaccggacgaggaaactctagacaacaccccaagagctt 21408930
Query: 181 gagaacattcttatggctgctcat-atcgatgaaaccgcaatatc--ggtaaaagttgtc 237
|||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct: 21408929 gagaacattcttatggctgctcatcatcgatgaaaccgcaatatcacggtaaaagttgtc 21408870
Query: 238 agggtcaaagttaaagggttcatctttatagtacttgatcagcacggctctgttttcaat 297
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 21408869 agggtcaaagttaaagggttcacctttatagtacttgatcagcacggctctgttttcaat 21408810
Query: 298 cgtacctttgtaccacacgaatctgtctacaccgattcgatagctccagtcgaagttgtt 357
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 21408809 cgtacctttgtaccacacgaatctgtctacaccgattgcatagctccagtcgaagttgtt 21408750
Query: 358 tgtagcttcaaggatttggtgagaagaaaacgtacggatgggattgtatttacctcctga 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21408749 tgtagcttcaaggatttggtgagaagaaaacgtacggatgggattgtatttacctcctga 21408690
Query: 418 cgatgcaatgagtaaagtcccacatcgacaagttagagagccgtggtcataagcattgta 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21408689 cgatgcaatgagtaaagtcccacatcgacaagttagagagccgtggtcataagcattgta 21408630
Query: 478 gtataaataagaacgtccgcccatcgtccaaatcatacctttctcggccttttggctaag 537
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21408629 gtataaataagaagctccgcccatcgtccaaatcatacctttctcggccttttggctaag 21408570
Query: 538 atcaagtgtagtatctgttcttatcagtttaatatctgatatgtgggccatcggcccaca 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21408569 atcaagtgtagtatctgttcttatcagtttaatatctgatatgtgggccatcggcccaca 21408510
Query: 598 cgatattaactctattttttaagggagaaagcccactaagatagcttgctatctgggctt 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21408509 cgatattaactctattttttaagggagaaagcccactaagatagcttgctatctgggctt 21408450
Query: 658 tcacgagtcgcccatgcgttgcactactgcacgggcctggctcaacccgccaagcaaata 717
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21408449 tcacgagtcgcccatgcgttgcactactgcacgggcctggctcaacccgccaagcaaat- 21408391
Query: 718 aagtcaaaactttttaaaccttactctttatctttcaagtccaaaagctcagaggataaa 777
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21408390 aagtcaaaactttttaaaccttactctttatctttcaagtccaaaagctcagaggataaa 21408331
Query: 778 agtgaatggag-aaaacttcgttaaataacgttttctgtaattatctatcttcctgtaga 836
||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 21408330 agtgaatggagaaaaactctgttaaataacgttttctgtaattatctatcttcctgtaga 21408271
Query: 837 aaatcagagatatttatatatgttacgcagg 867
|||||||||||||||||||||||||||||||
Sbjct: 21408270 aaatcagagatatttatatatgttacgcagg 21408240
BLASTN 2.1.2 [Oct-19-2000]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|17663|emb|X06475.1|ATU24 Arabidopsis thaliana U2 RNA
gene (U2.4)
(884 letters)
Database: /DATA/GENOME_NEW/Arath/ATGall.fsa
7 sequences; 119,769,761 total letters
Searching......done Score E
Sequences producing significant alignments: (bits) Value
gi|30698537|ref|NC_003074.4| Arabidopsis thaliana chromosom... 1437 0.0
>gi|30698537|ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complete sequence
Length = 23470805
Score = 1437 bits (725), Expect = 0.0
Identities = 846/879 (96%), Gaps = 13/879 (1%)
Strand = Plus / Minus
Query: 11 aaccttcgaacctaccaaaggccagtcaccagcaaacaatactcgagacttgtctttaat 70
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21053576 aaccttcgaacctaccaaaggccagtcaccagcaaacaatactcgagacttgtctttaat 21053517
Query: 71 acctg--atatgattctcagtcgaagcatcattgaactcgagatcgataattataaaaac 128
|||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 21053516 accttgtatatgattctcagtcgaagcatcattgaactgcagatcgataattataaaaac 21053457
Query: 129 gttgatccctgaaacatcttccacaaa-cagacttttgaagtaatttcgaaaatttccac 187
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 21053456 gttgatccctgaaacatcttccacttttcagacttttgaagtaatttcgaaaatttccac 21053397
Query: 188 ctttcttctttaggaggatccagcnnnnnnnnnnaacacacactcatcaaattccagttt 247
|||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 21053396 ctttcttctttaggaggatccagcttttttttttaacacacactcatcaaattccagttt 21053337
Query: 248 tcctctgtgcgcacagatcagatcactgatcttgaagtatcaccagctcacaatttctta 307
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 21053336 tcctctgtgcgcacagatcagatcactgatcttcaagtatcaccagctcacaatttctta 21053277
Query: 308 tggtctttcctagtgctgcaattgatctcaaa-gagcacacagaggcagaaggcaagata 366
|||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||
Sbjct: 21053276 tggtctttcctagtgctgcaattgatctcaaaagagcacacagaggcagaag-caagata 21053218
Query: 367 gtttcaaaccatgacgacgttgtcaaaatctccgacaagaaccagatg-ctaagcccatg 425
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 21053217 gtttcaaaccatgacgacgttgtcaaaatctccgacaagaaccagatggctaagcccatg 21053158
Query: 426 acatatattgaaccagatgtctaatgtctcttattgatatgttcgcgtttgcttatagat 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21053157 acatatattgaaccagatgtctaatgtctcttattgatatgttcgcgtttgcttatagat 21053098
Query: 486 gcgtaaagagtctatttttctaaacgtcccacatcgacaagttagagagcattggtcata 545
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21053097 gcgtaaagagtctatttttctaaacgtcccacatcgacaagttagagagcattggtcata 21053038
Query: 546 agatgtgtaatatataaagaaagctgagccaattgtccaattcatacctttctcggcctt 605
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 21053037 agatgtgtaatatataaagaaagctgagcccattgtccaattcatacctttctcggcctt 21052978
Query: 606 ttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgggccat 665
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21052977 ttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgggccat 21052918
Query: 666 cggcccacacgatattaactctattttttaagggagaaagcccactaagatagcttgcta 725
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21052917 cggcccacacgatattaactctattttttaagggagaaagcccactaagatagcttgcta 21052858
Query: 726 tctgggctttcaagagtcgcccatgcgttgcactactgcaagggctggctcaacccgcca 785
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21052857 tctgggctttcaagagtcgcccatgcgttgcactactgcaagggctggctcaacccgcca 21052798
Query: 786 gctaaccagtcaaattttcgactcatctctaattaatcaaactctataaaaccaaaactt 845
|||||||||||||||||| | | ||||||||||||||||||||||||||| ||| ||
Sbjct: 21052797 gctaaccagtcaaatttt-gtc---tctctaattaatcaaactctataaaac--aaaatt 21052744
Query: 846 aattaattaacaccaaatcaacaatgaacagaggaagat 884
||||||||||||||||||||| |||||||||||||||||
Sbjct: 21052743 aattaattaacaccaaatcaa-aatgaacagaggaagat 21052706
BLASTN 2.1.2 [Oct-19-2000]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|17664|emb|X06476.1|ATU25 Arabidopsis thaliana U2 RNA
gene (U2.5)
(748 letters)
Database: /DATA/GENOME_NEW/Arath/ATGall.fsa
7 sequences; 119,769,761 total letters
Searching......done Score E
Sequences producing significant alignments: (bits) Value
gi|30698605|ref|NC_003076.4| Arabidopsis thaliana chromosom... 1283 0.0
>gi|30698605|ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complete sequence
Length = 26992728
Score = 1283 bits (647), Expect = 0.0
Identities = 707/731 (96%), Gaps = 2/731 (0%)
Strand = Plus / Plus
Query: 9 gattgaagttgaaagttgagtcgattcctttcttgagccggttttgatttagattagttt 68
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2974564 gattgaagttgaaagttgagtcgattcctttcttgagccggttttgatttagattagttt 2974623
Query: 69 gggcacagctacagctacatgtaaggcggtgaaatcgaacggcctaaaattgagaacgca 128
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2974624 gggcacagctacagctacatgtaaggcggtgaaatcgaacggcctaaaattgagaacgca 2974683
Query: 129 acaagtgtacatgtctactccagttattcttgattttgtttattctcnnnnnnnnnnnng 188
||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 2974684 acaagtgtacatgtctactccagttattcttgattttgtttattctcttttttttttttg 2974743
Query: 189 tcaaagtatcttgagccgttttctctggatttttatttgactcgctcttcttttcttgct 248
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2974744 tcaaagtatcttgagccgttttctctggatttttatttgactcgctcttcttttcttgct 2974803
Query: 249 atccaaaaaaggttaaaagaagttg-aagcttgtttggcttgaggtttaagactatcatc 307
||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||
Sbjct: 2974804 atccaaaaaaggttaaaagaagttggaagcttgtttggcttcaggtttaagactatcatc 2974863
Query: 308 aatcaggcgttgttacgaaacccgctaaaagagaaagagggttatagttatttagtttca 367
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2974864 aatcaggcgttgttacgaaacccgctaaaagagaaagagggttatagttatttagtttca 2974923
Query: 368 ctcgttcacgaagtcccacatcgctaagaaaagaacgtgaaagaaaaaac-agtggtata 426
||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 2974924 ctcgttcgcgaagtcccacatcgctaagaaaagaacgtgaaagaaaaaacgagtggtata 2974983
Query: 427 aagtacgaggccatggcactcagcaaatcatacctttctcggccttttggctaagatcaa 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2974984 aagtacgaggccatggcactcagcaaatcatacctttctcggccttttggctaagatcaa 2975043
Query: 487 gtgtagtatctgttcttatcagtttaatatctgatatgtgggccatcggcccacacgata 546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2975044 gtgtagtatctgttcttatcagtttaatatctgatatgtgggccatcggcccacacgata 2975103
Query: 547 ttaactctattttttaagggaggaagcccgtttagatagcttgctatctgggctttcacg 606
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2975104 ttaactctattttttaagggaggaagcccgtttagatagcttgctatctgggctttcacg 2975163
Query: 607 agtctcccatgcgttgcactattgcgagggcttggctcaacccgccatttattcagtcta 666
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2975164 agtctcccatgcgttgcactattgcgagggcttggctcaacccgccatttattcagtcta 2975223
Query: 667 aggaaatnnnnnnnngctaaagtgattaaatcgaaaagccaaataaaatccatgaacgtc 726
||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2975224 aggaaataaaaaaaagctaaagtgattaaatcgaaaagccaaataaaatccatgaacgtc 2975283
Query: 727 cgtctttcttg 737
|||||||||||
Sbjct: 2975284 cgtctttcttg 2975294
BLASTN 2.1.2 [Oct-19-2000]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|17665|emb|X52312.1|ATU26 Arabidopsis thaliana U2.6
snRNA gene for U2 snRNA
(550 letters)
Database: /DATA/GENOME_NEW/Arath/ATGall.fsa
7 sequences; 119,769,761 total letters
Searching......done Score E
Sequences producing significant alignments: (bits) Value
gi|30698537|ref|NC_003074.4| Arabidopsis thaliana chromosom... 1074 0.0
>gi|30698537|ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complete sequence
Length = 23470805
Score = 1074 bits (542), Expect = 0.0
Identities = 548/550 (99%)
Strand = Plus / Plus
Query: 1 tttgaggattttttcttaagtttccgtctctcttcttctgggtttacatagttctgtgat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21015238 tttgaggattttttcttaagtttccgtctctcttcttctgggtttacatagttctgtgat 21015297
Query: 61 caatgccaaataacgcacagagataatttctcttattgttttgttgattaaagaagaaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21015298 caatgccaaataacgcacagagataatttctcttattgttttgttgattaaagaagaaat 21015357
Query: 121 tatgagtaatagaagactaaagcctattttcttaacgtcccacatcgacaagttagagag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21015358 tatgagtaatagaagactaaagcctattttcttaacgtcccacatcgacaagttagagag 21015417
Query: 181 cgttggtcataagctttgtaatatataaaggaagctgagccaaacgttcaattcatacct 240
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 21015418 cgttggtcataagctttgtaatatataaaggaagctgagccaaacgttcacttcatacct 21015477
Query: 241 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21015478 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgat 21015537
Query: 301 atgtgggccatcggcccacacgatattaactctattttttgagggagaaagcccactaag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21015538 atgtgggccatcggcccacacgatattaactctattttttgagggagaaagcccactaag 21015597
Query: 361 atagcttgctatctgggctttcaagagtcgcctatgcgttgcactactgcacaggcttgg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21015598 atagcttgctatctgggctttcaagagtcgcctatgcgttgcactactgcacaggcttgg 21015657
Query: 421 ctcaacccgccaaatttatagttgaagtgttgaactttcaatcttgttgataagggataa 480
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 21015658 ctcaacccgccaaatttatagttgaagtgttgaactttcaaacttgttgataagggataa 21015717
Query: 481 aatgtgaatacagaaattaattcggattctcaaacagttattaaagtattgtgagatttg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21015718 aatgtgaatacagaaattaattcggattctcaaacagttattaaagtattgtgagatttg 21015777
Query: 541 ataagtaaat 550
||||||||||
Sbjct: 21015778 ataagtaaat 21015787
BLASTN 2.1.2 [Oct-19-2000]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|17666|emb|X06477.1|ATU27 Arabidopsis thaliana U2 RNA
gene (U2.7)
(842 letters)
Database: /DATA/GENOME_NEW/Arath/ATGall.fsa
7 sequences; 119,769,761 total letters
Searching......done Score E
Sequences producing significant alignments: (bits) Value
gi|30698605|ref|NC_003076.4| Arabidopsis thaliana chromosom... 1509 0.0
>gi|30698605|ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complete sequence
Length = 26992728
Score = 1509 bits (761), Expect = 0.0
Identities = 815/831 (98%), Gaps = 5/831 (0%)
Strand = Plus / Minus
Query: 16 aatgtccatagtt-ctgattcttt--ggcaagtttaagtacatcctgaatgttcgataaa 72
||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 24731319 aatgtccatagtttctgattctttttggcaagtttaagtacatcctgaatgttcgataaa 24731260
Query: 73 ggctagtgtcatcaacatctctaatacatatgacagccaaggagcatccattgaaaaatg 132
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24731259 ggctagtgtcatcaacatctctaatacatatgacagccaaggagcatccattgaaaaatg 24731200
Query: 133 aggcaataaaattgagtacttataaactgttcatacttcttttctacctttgacgttgta 192
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24731199 aggcaataaaattgagtacttataaactgttcatacttcttttctacctttgacgttgta 24731140
Query: 193 aatgttaaatttatgaacttaagaatgtcattgctacnnnnnnnnnncaatgtgattgct 252
||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 24731139 aatgttaaatttatgaacttaagaatgtcattgctacaaaaaaaaa-caatgtgattgct 24731081
Query: 253 atgcaatatacatgtaatttgaatataaatcttggtccggttacgctaaaccaaaatctg 312
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24731080 atgcaatatacatgtaatttgaatataaatcttggtccggttacgctaaaccaaaatctg 24731021
Query: 313 atattatctgggctacgtgtggattaaaaatccgattagggggagtcgtgcaaagcccac 372
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24731020 atattatctgggctacgtgtggattaaaaatccgattagggggagtcgtgcaaagcccac 24730961
Query: 373 taaaagaaacaggcggtttgttttattttaaataacttttaactcgttccaaagtcccac 432
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24730960 taaaagaaacaggcggtttgttttattttaaataacttttaactcgttccaaagtcccac 24730901
Query: 433 atcgctaacaatttaagaggtgaagacaagacgagtagtataaataacgag-ccacggcc 491
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 24730900 atcgctaacaatttaagaggtgaagacaagacgagtagtataaataacgaggccacggcc 24730841
Query: 492 acgaacaattcatacctttctcggccttttggctaagatcaagtgtagtatctgttctta 551
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24730840 acgaacaattcatacctttctcggccttttggctaagatcaagtgtagtatctgttctta 24730781
Query: 552 tcagtttaatatctgatatgtgggccatcggcccacacgatattaactctattttttaag 611
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24730780 tcagtttaatatctgatatgtgggccatcggcccacacgatattaactctattttttaag 24730721
Query: 612 ggagaaaacccactaaggtagcttgctatctgggttttcacgagtcgcccatgcgttgca 671
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24730720 ggagaaaacccactaaggtagcttgctatctgggttttcacgagtcgcccatgcgttgca 24730661
Query: 672 ctactgcacgggcctggctcatcccgccaataaaccagtaaaattataaatattggaaat 731
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24730660 ctactgcacgggcctggctcatcccgccaataaaccagtaaaattataaatattggaaat 24730601
Query: 732 ctgccactatgttgtagatttgggcttagggacctaaataaataacgccatgtaactggt 791
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 24730600 ctgccactatgttgtagatttgggcttagggacctaaataaataacgttatgtaactggt 24730541
Query: 792 ggatgaccgttgaaaccctcatacgcgatgcacatggttaggatagaattc 842
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24730540 ggatgaccgttgaaaccctcatacgcgatgcacatggttaggatagaattc 24730490
BLASTN 2.1.2 [Oct-19-2000]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|17667|emb|X06478.1|ATU29 Arabidopsis thaliana U2 RNA
gene (U2.9)
(359 letters)
Database: /DATA/GENOME_NEW/Arath/ATGall.fsa
7 sequences; 119,769,761 total letters
Searching......done Score E
Sequences producing significant alignments: (bits) Value
gi|30698542|ref|NC_003075.3| Arabidopsis thaliana chromosom... 309 2e-83
>gi|30698542|ref|NC_003075.3| Arabidopsis thaliana chromosome 4, complete sequence
Length = 18585042
Score = 309 bits (156), Expect = 2e-83
Identities = 218/239 (91%), Gaps = 6/239 (2%)
Strand = Plus / Plus
Query: 121 agtcccacatcgacaagctagagagagtttgtcataaccttagtagtataagtaagaagc 180
|||||||||| |||||| ||||||| ||| ||||||| ||||||||| ||||||
Sbjct: 815200 agtcccacatggacaagatagagagcgttggtcataagtttagtagta------agaagc 815253
Query: 181 tgagcccatcgaaaaattcatacctttctcggccttttggctaagatcaagtgtagtatc 240
||||||| | | || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 815254 tgagccctttggttaactcatacctttctcggccttttggctaagatcaagtgtagtatc 815313
Query: 241 tgttcttatcagtttaatatctgatatgtgggccatcggcccacacgatattaactctat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 815314 tgttcttatcagtttaatatctgatatgtgggccatcggcccacacgatattaactctat 815373
Query: 301 tttttaagggagaaagcccgttaagatagcttgctatctgggctttcgcgagtcgccca 359
||||||||||||||||||||||||||||||||||||||| ||||||| |||||| ||||
Sbjct: 815374 tttttaagggagaaagcccgttaagatagcttgctatctaggctttcacgagtccccca 815432
Score = 73.8 bits (37), Expect = 2e-12
Identities = 91/104 (87%), Gaps = 5/104 (4%)
Strand = Plus / Plus
Query: 3 ttagagccgacaagtaccagatg-ctaagcccatgacgaaagttgaagcagatgtctgat 61
|||||||| |||||||||||||| |||| |||||||| || |||||| | |||||| ||
Sbjct: 815100 ttagagcccacaagtaccagatggctaaacccatgacaaaggttgaaacc-atgtctaat 815158
Query: 62 gtcttattgatttgt-cgcgtttgctcatagagatgcgtaaaaa 104
||||||||||||||| ||||||||||| | |||||||||||||
Sbjct: 815159 gtcttattgatttgtccgcgtttgctc--acagatgcgtaaaaa 815200
BLASTN 2.1.2 [Oct-19-2000]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|17673|emb|X67145.1|ATU41SN A.thaliana U4.1 snRNA gene
(427 letters)
Database: /DATA/GENOME_NEW/Arath/ATGall.fsa
7 sequences; 119,769,761 total letters
Searching......done Score E
Sequences producing significant alignments: (bits) Value
gi|30698605|ref|NC_003076.4| Arabidopsis thaliana chromosom... 674 0.0
>gi|30698605|ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complete sequence
Length = 26992728
Score = 674 bits (340), Expect = 0.0
Identities = 343/344 (99%)
Strand = Plus / Minus
Query: 78 gaattcgattgtgtttatttattgtattggtacaagaataccacatcggaagaacgcatc 137
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19903086 gaattcgattgtgtttatttattgtattggtacaagaataccacatcggaagaacgcatc 19903027
Query: 138 aagttggtcggttttgtttggatataaataaagaggcttgtgtttgaaacaaacttatct 197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19903026 aagttggtcggttttgtttggatataaataaagaggcttgtgtttgaaacaaacttatct 19902967
Query: 198 ttgcgcttggggcaatgacgcagctaatgaggttctaaccgaggcgcgtctattgctggt 257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19902966 ttgcgcttggggcaatgacgcagctaatgaggttctaaccgaggcgcgtctattgctggt 19902907
Query: 258 tgaaaactatttccaaaccccctcctaggcctaagcttgtcttaggccttcgagaatttc 317
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 19902906 tgaaaactatttccaaaccccctcctaggcctaagcttgtcttgggccttcgagaatttc 19902847
Query: 318 tggaagggctccctttggggtaaagccctacaattttcagttcaatttttagttgtggca 377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19902846 tggaagggctccctttggggtaaagccctacaattttcagttcaatttttagttgtggca 19902787
Query: 378 ttgtgtctctctttctcgaagggctcagtgaatttgtggaagac 421
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19902786 ttgtgtctctctttctcgaagggctcagtgaatttgtggaagac 19902743
BLASTN 2.1.2 [Oct-19-2000]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|17674|emb|X67146.1|ATU42SN A.thaliana U4.2 snRNA gene
(579 letters)
Database: /DATA/GENOME_NEW/Arath/ATGall.fsa
7 sequences; 119,769,761 total letters
Searching......done Score E
Sequences producing significant alignments: (bits) Value
gi|30698537|ref|NC_003074.4| Arabidopsis thaliana chromosom... 1074 0.0
>gi|30698537|ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complete sequence
Length = 23470805
Score = 1074 bits (542), Expect = 0.0
Identities = 571/580 (98%), Gaps = 8/580 (1%)
Strand = Plus / Minus
Query: 1 ttccctgcaagtgatcgaaagacccctggatcttcagtaactacaaagctacagagttat 60
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 2178631 ttccctgcaagtgatcgaaagacccttggatcttcagtaactacaaagctacagagttat 2178572
Query: 61 atatgtgaacgaatcttgtcgctttcagatttcagatttaaagttgtattgagaaagaag 120
|||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 2178571 atatgtgaacgaatcttgtcgctttcagattt-------aaagttgtattgagaaagaag 2178519
Query: 121 aggttgccgtcttctggtagagacttggagaagaagagagtctgttcaattcatctagcg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2178518 aggttgccgtcttctggtagagacttggagaagaagagagtctgttcaattcatctagcg 2178459
Query: 181 aataggtttctttctagaataatataactagagggagtcccacatcgaaaagaaattgta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2178458 aataggtttctttctagaataatataactagagggagtcccacatcgaaaagaaattgta 2178399
Query: 241 agatggttggttttgttcgggtataaataaagagggtttagttcggttgaaagtcatctt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2178398 agatggttggttttgttcgggtataaataaagagggtttagttcggttgaaagtcatctt 2178339
Query: 301 tgcgcttggggcaatgacgcagctaatgaggtactaaccgaggcgcgtctattgctggtt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2178338 tgcgcttggggcaatgacgcagctaatgaggtactaaccgaggcgcgtctattgctggtt 2178279
Query: 361 gaaaactatttccaaaccccctcctgggcctaagcttgtcttgggccttcgagaatttct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2178278 gaaaactatttccaaaccccctcctgggcctaagcttgtcttgggccttcgagaatttct 2178219
Query: 421 ggaagggctccctttg-ggtaaagccctacaataactagtctaaatgtttttcgagtttt 479
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2178218 ggaagggctccctttggggtaaagccctacaataactagtctaaatgtttttcgagtttt 2178159
Query: 480 gaaatttagaaaatcaaatatcatggaaagtatatatcacacaatctaggcccaagaaaa 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2178158 gaaatttagaaaatcaaatatcatggaaagtatatatcacacaatctaggcccaagaaaa 2178099
Query: 540 catcacttgctgatgatgaggcctgatagtgaaaattgaa 579
||||||||||||||||||||||||||||||||||||||||
Sbjct: 2178098 catcacttgctgatgatgaggcctgatagtgaaaattgaa 2178059
BLASTN 2.1.2 [Oct-19-2000]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|17675|emb|X67147.1|ATU43SN A.thaliana U4.3 snRNA
pseudogene
(448 letters)
Database: /DATA/GENOME_NEW/Arath/ATGall.fsa
7 sequences; 119,769,761 total letters
Searching......done Score E
Sequences producing significant alignments: (bits) Value
gi|30698605|ref|NC_003076.4| Arabidopsis thaliana chromosom... 333 2e-90
>gi|30698605|ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complete sequence
Length = 26992728
Score = 333 bits (168), Expect = 2e-90
Identities = 270/301 (89%), Gaps = 16/301 (5%)
Strand = Plus / Minus
Query: 1 gcagaggggtcatccgttagcgcggtcactaccattaatggttttagtttgttttttcca 60
||||||||||||| ||||||||||||||||||||||||| |||||||||| |||||||||
Sbjct: 20112307 gcagaggggtcatgcgttagcgcggtcactaccattaatagttttagttttttttttcca 20112248
Query: 61 tgtttccatttctaagttttaagtgataaggtaattgactaagttcttctttttggaatg 120
|||||||||||||||||||||||| |||||||||||||||||||||| | |||||||||
Sbjct: 20112247 tgtttccatttctaagttttaagttataaggtaattgactaagttct--tatttggaatg 20112190
Query: 121 ccaagttttgaatatgttaaagttattgttatggtatacagtcctacatcggaaaaatgc 180
||||||||||||||||||||||||||| || ||||||||||||||||| ||| |||||||
Sbjct: 20112189 ccaagttttgaatatgttaaagttattattttggtatacagtcctacaacgg-aaaatgc 20112131
Query: 181 atcaagtaggtcgcttttgttttgatataaataaagaggtttgtgttgaaagaaacttat 240
|||||||| ||| |||||||||||||| ||||||||||||||||| ||||||||
Sbjct: 20112130 atcaagtaaatcggttttgttttgatat-----aagaggtttgtgttgaacaaaacttat 20112076
Query: 241 cgttgcgcttggacaatgacacatctaatgaggttctaaccgagatgcgtctatgctggt 300
||||| ||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 20112075 -------cttgg-caatgacacatctaatgaggttctaaccgaggcgcgtctatgctggt 20112024
Query: 301 t 301
|
Sbjct: 20112023 t 20112023
Score = 99.6 bits (50), Expect = 5e-20
Identities = 53/54 (98%)
Strand = Plus / Minus
Query: 391 ttcaaatgtatatttttctcaagttatggcattgagtcttcttatgacctaagg 444
||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 20111992 ttcaaatgtatatttttctcaagttatggcattgagtcttcttctgacctaagg 20111939
BLASTN 2.1.2 [Oct-19-2000]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|17676|emb|X13012.1|ATU5RNA Arabidopsis thaliana DNA
for U5 small nuclear RNA
(1275 letters)
Database: /DATA/GENOME_NEW/Arath/ATGall.fsa
7 sequences; 119,769,761 total letters
Searching......done Score E
Sequences producing significant alignments: (bits) Value
gi|30698537|ref|NC_003074.4| Arabidopsis thaliana chromosom... 856 0.0
>gi|30698537|ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complete sequence
Length = 23470805
Score = 856 bits (432), Expect = 0.0
Identities = 800/909 (88%), Gaps = 38/909 (4%)
Strand = Plus / Minus
Query: 2 aagtagttcaactaactaatgctgatttacacagatactatatctctatttctgatcacc 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20741278 aagtagttcaactaactaatgctgatttacacagatactatatctctatttctgatcacc 20741219
Query: 62 aaagatcagaagaccaaaaagaagcaaagttttggannnnnnnncttagataggcattca 121
|||||||||||||| ||||||||||||||||| ||| ||||||||||| ||||
Sbjct: 20741218 aaagatcagaagac-aaaaagaagcaaagttt-ggattgtttttcttagataggctttca 20741161
Query: 122 caagattagaatttagtaaccattgagaca----agaccaacatgattctgtgagtagct 177
||||||||||||| |||||||||||||||| |||||||| ||| ||||||| |||||
Sbjct: 20741160 caagattagaattaagtaaccattgagacatgcaagaccaacctgagtctgtgattagct 20741101
Query: 178 gtcaatgttctcttccaagaagct-atatacatcaccg-ttagaagagaactcatacatt 235
|||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||
Sbjct: 20741100 gtcaatgttctcttccaagaagctcatatacatcaccggttagaagagaactcatacatt 20741041
Query: 236 ttccctctaacaaataattagtaccttatgaacgcttggcagaatttgcataaaacatta 295
||||||||||||||||| ||||||||||||| ||||||||||||||||||||||
Sbjct: 20741040 ttccctctaacaaataa---gtaccttatgaacacttggcagaatttgcataaaac---- 20740988
Query: 296 aactccaaggcaacttcaac--tataaggttccacataagttacagtgctcaaaaattgc 353
||||||||||||||||| ||||||||||||||||||| |||||||||||||| |||
Sbjct: 20740987 ---tccaaggcaacttcaacgttataaggttccacataagtcacagtgctcaaaaaatgc 20740931
Query: 354 ttgtccttgagaatctgttcaactccaagaccagcaaagctcccaaaatttactaatctc 413
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 20740930 ttgtccttgagaatctgttcaactccaagaccagcaaagctcccaaaatttactgatctc 20740871
Query: 414 tgtcctctatat--atgtgttggttatatgtatatcagtgacttagcttatacgaaatta 471
|||||||||||| ||| ||||||| ||| ||| |||||| ||||||||||||||||||
Sbjct: 20740870 tgtcctctatatatatgggttggttgtatatat-ccagtgatttagcttatacgaaatta 20740812
Query: 472 gcattgtacagtcgtcagttaaaatgggcccgtatcaataaaacctgaatttgttggtga 531
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 20740811 acattgtacagtcgtcagttaaaatgggcccgtatcaacaaaacctgaatttgttggtga 20740752
Query: 532 tgttnnnnnnnntgtttatgggctttcgagtatcctacaaagcc-ttttaacaagggaac 590
|| ||||| |||||||| ||||||||||||||||| ||||||||||| |||
Sbjct: 20740751 cattaaaaaaaatgtttttgggcttttgagtatcctacaaagcctttttaacaaggcaac 20740692
Query: 591 ttcaagtatcccacatcggaaagctaagagacggtgatagaggaaatgatagtataaata 650
|||||||||||||||||||||||||| ||| | || | |||||||||||||||||||
Sbjct: 20740691 ttcaagtatcccacatcggaaagcta--agattttcatcgtggaaatgatagtataaata 20740634
Query: 651 aacttcactctcctgggagtaaaaatcacgcagccatgtggtgagtacaaagcgaactat 710
|||||||||| | | | |||| |||||||||||||||||||| |||||||||||||
Sbjct: 20740633 cacttcactct-cagcatgaaaaattcacgcagccatgtggtgagcacaaagcgaacta- 20740576
Query: 711 ttctttcgccttttactaaagaataccgtgtgctctcgacgctaagt-gcatacgcctat 769
|||||||||||||||||||||||||||||||||||| |||| |||| ||||||||||||
Sbjct: 20740575 ctctttcgccttttactaaagaataccgtgtgctctccacgccaagtggcatacgcctat 20740516
Query: 770 ttttggagggctc-cacttctctgtggaacccaacatttacactagtctaaatatcaatt 828
||||||||||||| ||| | |||| |||||| | || | |||||| ||||| ||||
Sbjct: 20740515 ttttggagggctctcacgtaaatgtgagacccaatagtttc--tagtctgaatattaatt 20740458
Query: 829 tattttcttgtcttgctccaatcccctgattggattgcaagtactaaagtccagtagtta 888
|||||| |||||||||| ||||| |||||| |||||| |||||| ||||| ||||
Sbjct: 20740457 tatttt-atgtcttgctc-----ccctgtttggatagcaagttctaaagcccagtggtta 20740404
Query: 889 aagaatata 897
|||||||||
Sbjct: 20740403 aagaatata 20740395
BLASTN 2.1.2 [Oct-19-2000]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|16516|emb|X52527.1|ATSNU61 Arabidopsis thaliana U6-1
snRNA gene
(795 letters)
Database: /DATA/GENOME_NEW/Arath/ATGall.fsa
7 sequences; 119,769,761 total letters
Searching......done Score E
Sequences producing significant alignments: (bits) Value
gi|30698537|ref|NC_003074.4| Arabidopsis thaliana chromosom... 1433 0.0
>gi|30698537|ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complete sequence
Length = 23470805
Score = 1433 bits (723), Expect = 0.0
Identities = 774/794 (97%), Gaps = 2/794 (0%)
Strand = Plus / Plus
Query: 1 agaaatctcaaaattccggcagaacaattttgaatctcgatccgtagaaacgagacggtc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4951292 agaaatctcaaaattccggcagaacaattttgaatctcgatccgtagaaacgagacggtc 4951351
Query: 61 attgttttagttccaccacgattatatttgaaatttacgctgagtgtgagtgagacttgc 120
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 4951352 attgttttagttccaccacgattatatttgaaatttacg-tgagtgtgagtgagacttgc 4951410
Query: 121 ataagaaaataaaatctttagttgggaaaaaattcaataatataaatgggcttgagaagg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4951411 ataagaaaataaaatctttagttgggaaaaaattcaataatataaatgggcttgagaagg 4951470
Query: 181 aagcgagggataggcctttttctaaaataggcccatttaagctattaacaatcttcaaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4951471 aagcgagggataggcctttttctaaaataggcccatttaagctattaacaatcttcaaaa 4951530
Query: 241 gtaccacatcgcttaggtaaagaaagcagctgagtttatatatggttagagacgaagtag 300
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4951531 gtaccacagcgcttaggtaaagaaagcagctgagtttatatatggttagagacgaagtag 4951590
Query: 301 tgattgtcccttcggggacatccgataaaattggaacgatacagagaagattagcatggc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4951591 tgattgtcccttcggggacatccgataaaattggaacgatacagagaagattagcatggc 4951650
Query: 361 ccctgcgcaaggatgacacgcataaatcgagaaatggtccaaannnnnnnnggcaaaaat 420
||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 4951651 ccctgcgcaaggatgacacgcataaatcgagaaatggtccaaattttttttggcaaaaat 4951710
Query: 421 tttcagattttttcttcatctgtagatttctgggnnnnnnnnnccgtttcggtgaatcat 480
|||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct: 4951711 tttcagattttttcttcatctgtagatttctgggtttttttttccgtttcg-tgaatcat 4951769
Query: 481 aagtgaagttttggatgcaaatctgcgcgaaaaaagttggacctgcaatgagcttattta 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4951770 aagtgaagttttggatgcaaatctgcgcgaaaaaagttggacctgcaatgagcttattta 4951829
Query: 541 gatagctaagacaaagtgattggtccgttgtttcagttctgattgtcagagagtttgttt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4951830 gatagctaagacaaagtgattggtccgttgtttcagttctgattgtcagagagtttgttt 4951889
Query: 601 cgagacggcgacaccaatgcgttttgttaaccagatttcgggtaagaaatgtatcgagag 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4951890 cgagacggcgacaccaatgcgttttgttaaccagatttcgggtaagaaatgtatcgagag 4951949
Query: 661 tttgtttcgagacggctacatcattttcttatgaagggtgaaattagatagaccaaagat 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4951950 tttgtttcgagacggctacatcattttcttatgaagggtgaaattagatagaccaaagat 4952009
Query: 721 tgaaacacaacatttctttcacaaaaatataataaacttgatagcatttaggatcagcta 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4952010 tgaaacacaacatttctttcacaaaaatataataaacttgatagcatttaggatcagcta 4952069
Query: 781 ctctcactaatcag 794
||||||||||||||
Sbjct: 4952070 ctctcactaatcag 4952083
BLASTN 2.1.2 [Oct-19-2000]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|16517|emb|X52528.1|ATSNU626 Arabidopsis thaliana
U6-26 snRNA gene
(914 letters)
Database: /DATA/GENOME_NEW/Arath/ATGall.fsa
7 sequences; 119,769,761 total letters
Searching......done Score E
Sequences producing significant alignments: (bits) Value
gi|30698537|ref|NC_003074.4| Arabidopsis thaliana chromosom... 1598 0.0
>gi|30698537|ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complete sequence
Length = 23470805
Score = 1598 bits (806), Expect = 0.0
Identities = 876/910 (96%)
Strand = Plus / Plus
Query: 5 ttcgttgaacaacggaaactcgacttgccttccgcacaatacatcatttcttcttagcnn 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4560667 ttcgttgaacaacggaaactcgacttgccttccgcacaatacatcatttcttcttagctt 4560726
Query: 65 nnnnncttcttcttcgttcatacagnnnnnnnnngtttatcagcttacattttcttgaac 124
|||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 4560727 tttttcttcttcttcgttcatacagtttttttttgtttatcagcttacattttcttgaac 4560786
Query: 125 cgtagctttcgttttcttctttttaactttccattcggagtttttgtatcttgtttcata 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4560787 cgtagctttcgttttcttctttttaactttccattcggagtttttgtatcttgtttcata 4560846
Query: 185 gtttgtcccaggattagaatgattaggcatcgaaccttcaagaatttgattgaataaaac 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4560847 gtttgtcccaggattagaatgattaggcatcgaaccttcaagaatttgattgaataaaac 4560906
Query: 245 atcttcattcttaagatatgaagataatcttcaaaaggcccctgggaatctgaaagaaga 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4560907 atcttcattcttaagatatgaagataatcttcaaaaggcccctgggaatctgaaagaaga 4560966
Query: 305 gaagcaggcccatttatatgggaaagaacaatagtatttcttatataggcccatttaagt 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4560967 gaagcaggcccatttatatgggaaagaacaatagtatttcttatataggcccatttaagt 4561026
Query: 365 tgaaaacaatcttcaaaagtcccacatcgcttagataagaaaacgaagctgagtttatat 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4561027 tgaaaacaatcttcaaaagtcccacatcgcttagataagaaaacgaagctgagtttatat 4561086
Query: 425 acagctagagtcgaagtagtgattgtcccttcggggacatccgataaaattggaacgata 484
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 4561087 acagctagagtcgaagtagtgattgtcccttaggggacatccgataaaattggaacgata 4561146
Query: 485 cagagaagattagcatggcccctgcgcaaggatgacacgcataaatcgagaaatggtcca 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4561147 cagagaagattagcatggcccctgcgcaaggatgacacgcataaatcgagaaatggtcca 4561206
Query: 545 aannnnnnnngcaaaattttccagatcgatttcttcttcctctgttcttcggcgttcaat 604
|| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4561207 aattttttttgcaaaattttccagatcgatttcttcttcctctgttcttcggcgttcaat 4561266
Query: 605 ttctgggtttttctcttcgttttctgtaactgaaacctaaaatttgacctnnnnnnnntc 664
||||||| |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 4561267 ttctggggttttctcttcgttttctgtaactgaaacctaaaatttgacctaaaaaaaatc 4561326
Query: 665 tcaaataatatgattcagtggttttgtacttttcagttagttgagttttgcagttccgat 724
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4561327 tcaaataatatgattcagtggttttgtacttttcagttagttgagttttgcagttccgat 4561386
Query: 725 gagataaaccaataactttgcttagatctaattcattccgttacacctctgatggagatg 784
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4561387 gagataaaccaataactttgcttagatctaattcattccgttacacctctgatggagatg 4561446
Query: 785 gaaggttcttaataatgatgccattttttgggtaataattttgaattagaatcaagggta 844
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4561447 gaaggttcttaataatgatgccattttttgggtaataattttgaattagaatcaagggta 4561506
Query: 845 taagattcataattaacatcacttaagcaaagttcgtaatatacgaccacaggatataat 904
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4561507 taagattcataattaacatcacttaagcaaagttcgtaatatacgaccacaggatataat 4561566
Query: 905 ttttgaattc 914
||||||||||
Sbjct: 4561567 ttttgaattc 4561576
BLASTN 2.1.2 [Oct-19-2000]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|16518|emb|X52529.1|ATSNU629 Arabidopsis thaliana
U6-29 snRNA gene
(855 letters)
Database: /DATA/GENOME_NEW/Arath/ATGall.fsa
7 sequences; 119,769,761 total letters
Searching......done Score E
Sequences producing significant alignments: (bits) Value
gi|30698605|ref|NC_003076.4| Arabidopsis thaliana chromosom... 1283 0.0
>gi|30698605|ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complete sequence
Length = 26992728
Score = 1283 bits (647), Expect = 0.0
Identities = 741/773 (95%), Gaps = 5/773 (0%)
Strand = Plus / Plus
Query: 1 aaatatcagagatctcttacagttagtttcgttcttaatccaaactactgcagcctgaca 60
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18804297 aaatatcaaagatctcttacagttagtttcgttcttaatccaaactactgcagcctgaca 18804356
Query: 61 gacaaatgaggatgcaaacaattttaaagtttatctaacgctagctgttttgtttcttct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18804357 gacaaatgaggatgcaaacaattttaaagtttatctaacgctagctgttttgtttcttct 18804416
Query: 121 ctctggtgcaccaacgacggcgttttctcaatcataaagaggcttgttttacttaaggcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18804417 ctctggtgcaccaacgacggcgttttctcaatcataaagaggcttgttttacttaaggcc 18804476
Query: 181 aataatgttgatggatcgaaagaagagggcttttaataaacgagcccgtttaagctgtaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18804477 aataatgttgatggatcgaaagaagagggcttttaataaacgagcccgtttaagctgtaa 18804536
Query: 241 acgatgtcaaaaacatcccacatcgttcagttgaaaatagaagctctgtttatatattgg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18804537 acgatgtcaaaaacatcccacatcgttcagttgaaaatagaagctctgtttatatattgg 18804596
Query: 301 tagagtcgactaagagattgtcccttcggggacatccgataaaattggaacgatacagag 360
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 18804597 tagagtcgactaagagattgtcccttcggggacatctgataaaattggaacgatacagag 18804656
Query: 361 aagattagcatggcccctgcgcaaggatgacacgcataaatcgagaaatggtccaaannn 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18804657 aagattagcatggcccctgcgcaaggatgacacgcataaatcgagaaatggtccaaattt 18804716
Query: 421 nnnnggatagaatttcccagcttttttgcgtgtttcagctctcatgatccttggccaatg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18804717 ttttggatagaatttcccagcttttttgcgtgtttcagctctcatgatccttggccaatg 18804776
Query: 481 ggtgtagtaaattttctgcacattcattggatggaaaagaatggttttagctttagggaa 540
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 18804777 ggtgtagtaaattttctgcacattcattggatggaaaataatggttttagctttagggaa 18804836
Query: 541 taagaaaagtgtat---aaggggatttttgtacaatcacatttgaattaggtctttgaag 597
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18804837 taagaaaagtgtataggaaggggatttttgtacaatcacatttgaattaggtctttgaaa 18804896
Query: 598 tgacatggaatgaggacatatgatgaagctctgtcccttccaagaagtaagccggtgttc 657
||||| ||||||||||||||||||||||||||||||| |||||||||| ||| ||||||
Sbjct: 18804897 tgacagggaatgaggacatatgatgaagctctgtcccatccaagaagttggccagtgttc 18804956
Query: 658 ttgtctcagattttcgtttggccctgacataaacagagtcataacc--ttactaggaggg 715
|||||||||||| | |||||||||| |||||||||| |||||||| || ||||||
Sbjct: 18804957 ttgtctcagattgtggtttggccctcacataaacagcttcataaccttttgggtggaggg 18805016
Query: 716 ttaacttgattttgcagcaaagaagaggcttttccattatgtattcggttgct 768
||||||||||||||||||||||||||||||||||| ||||||||| |||||||
Sbjct: 18805017 ttaacttgattttgcagcaaagaagaggcttttcctttatgtattaggttgct 18805069
|
