VcGDB v.0 Loci/Annotations
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| Locus ID |
Gen ome |
Chr | From/To | Len (kb) |
Intron Count |
Str | # Tran |
Locus Description (hover for complete description) |
Gene | Gene Structure Annotation Project | Cov er age  |
Inte grity |
yrGATE Anno Count |
yrGATE Anno Class |
yrGATE Gene Product | Anno Status (click to view) |
Annotate it! |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Vocar20009522m.g | 1 | 25078 28152 |
3.1 | 3 | r | 1 | ID=PAC:23125778;Name=Vocar20009522m;pacid=23125778;longest=1;Parent=Vocar20... | 0.27 | 0.08 | ||||||||
| Vocar20009939m.g | 1 | 31758 33408 |
1.7 | 3 | f | 1 | PF00076 ... | 0.86 | 0.71 | ||||||||
| Vocar20009552m.g | 1 | 34249 40340 |
6.1 | 9 | r | 2 | PF01812 PTHR13017 KOG4410 6.3.3.2 K01934 AT1G76730.1 NagB/RpiA/CoA transfe... | 1 | 0.97 | ||||||||
| Vocar20008304m.g | 1 | 41020 47800 |
6.8 | 11 | f | 1 | PF07992,PF01266,PF00890,PF01593 PTHR23023 KOG0029 AT4G14210.1 PDE226,PDS,... | 0.33 | 0.26 | ||||||||
| Vocar20009156m.g | 1 | 54378 61966 |
7.6 | 6 | f | 1 | ID=PAC:23124969;Name=Vocar20009156m;pacid=23124969;longest=1;Parent=Vocar20... | 0 | |||||||||
| Vocar20008423m.g | 1 | 62625 64980 |
2.4 | 5 | f | 1 | ID=PAC:23125111;Name=Vocar20008423m;pacid=23125111;longest=1;Parent=Vocar20... | 1 | 0.96 | ||||||||
| Vocar20008721m.g | 1 | 65906 72238 |
6.3 | 10 | r | 1 | PF06423 PTHR20661 AT4G17910.1 transferases, transferring acyl groups... | 0 | |||||||||
| Vocar20009515m.g | 1 | 73548 79103 |
5.6 | 15 | r | 1 | PF11717,PF01853 PTHR10615 KOG2747 AT5G09740.1 HAM2 histone acetyltransfer... | 1 | 0.96 | ||||||||
| Vocar20009025m.g | 1 | 77490 83899 |
6.4 | 12 | r | 1 | PF05996 ... | 0.78 | 0.68 | ||||||||
| Vocar20008216m.g | 1 | 84000 88998 |
5 | 9 | f | 1 | PF03463,PF03464,PF03465 PTHR10113 KOG0688 K03265 AT3G26618.1 ERF1-3 eukary... | 1 | 0.98 | ||||||||
| Vocar20008845m.g | 1 | 89270 94950 |
5.7 | 9 | f | 1 | PF08164 PTHR15565 KOG2773 AT5G61330.1 rRNA processing protein-related... | 0.99 | 0.91 | ||||||||
| Vocar20009694m.g | 1 | 100061 101121 |
1.1 | 2 | f | 1 | PTHR10795:SF32 ... | 0 | |||||||||
| Vocar20009595m.g | 1 | 102641 103197 |
0.6 | 0 | r | 1 | ID=PAC:23125373;Name=Vocar20009595m;pacid=23125373;longest=1;Parent=Vocar20... | 0.96 | 0.87 | ||||||||
| Vocar20009562m.g | 1 | 118921 138014 |
19.1 | 35 | f | 1 | ID=PAC:23126006;Name=Vocar20009562m;pacid=23126006;longest=1;Parent=Vocar20... | 0.07 | 0.07 | ||||||||
| Vocar20009265m.g | 1 | 139816 142401 |
2.6 | 0 | r | 1 | ID=PAC:23126513;Name=Vocar20009265m;pacid=23126513;longest=1;Parent=Vocar20... | 1 | 0.99 | ||||||||
| Vocar20009179m.g | 1 | 144125 153429 |
9.3 | 14 | r | 1 | ID=PAC:23126477;Name=Vocar20009179m;pacid=23126477;longest=1;Parent=Vocar20... | 0 | |||||||||
| Vocar20008241m.g | 1 | 155076 161613 |
6.5 | 8 | f | 1 | PTHR23125 ... | 0 | |||||||||
| Vocar20008638m.g | 1 | 183100 185055 |
2 | 4 | f | 1 | ID=PAC:23125147;Name=Vocar20008638m;pacid=23125147;longest=1;Parent=Vocar20... | 0 | |||||||||
| Vocar20009561m.g | 1 | 203067 211245 |
8.2 | 9 | f | 1 | PF00497,PF10613 PTHR18966 K05198 AT1G05200.1 ATGLR3.4,GLR3.4,GLUR3 glutam... | 0 | |||||||||
| Vocar20009273m.g | 1 | 212064 222697 |
10.6 | 17 | r | 1 | PF01433,PF09127 PTHR11533 KOG1047 3.3.2.6 K01254 AT5G13520.1 peptidase M1 ... | 0.56 | 0.43 | ||||||||
| Vocar20008610m.g | 1 | 223786 232224 |
8.4 | 12 | r | 1 | PF08534,PF00578,PF01436 PTHR13712:SF9 AT1G56500.1 haloacid dehalogenase... | 0.57 | 0.42 | ||||||||
| Vocar20009186m.g | 1 | 233641 239166 |
5.5 | 9 | f | 1 | PF00501 PTHR11968 KOG1176 AT3G16170.1 AMP-dependent synthetase and ligas... | 0.42 | 0.32 | ||||||||
| Vocar20008877m.g | 1 | 240658 246566 |
5.9 | 12 | r | 1 | PF02190 PTHR14255 K11793 AT2G25740.1 ATP-dependent protease La (LON) dom... | 0 | |||||||||
| Vocar20008684m.g | 1 | 246871 252619 |
5.7 | 7 | f | 1 | PF02214 PTHR14499 ... | 0 | |||||||||
| Vocar20009905m.g | 1 | 255825 259234 |
3.4 | 7 | r | 2 | PF00076 PTHR23147 KOG0126 K12900 AT5G18810.1 SCL28 SC35-like splicing fact... | 1 | 0.96 | ||||||||
| Vocar20009277m.g | 1 | 260865 263141 |
2.3 | 1 | r | 1 | ID=PAC:23125726;Name=Vocar20009277m;pacid=23125726;longest=1;Parent=Vocar20... | 1 | 0.95 | ||||||||
| Vocar20008631m.g | 1 | 264034 264606 |
0.6 | 1 | r | 1 | ID=PAC:23125449;Name=Vocar20008631m;pacid=23125449;longest=1;Parent=Vocar20... | 1 | 0.95 | ||||||||
| Vocar20008359m.g | 1 | 279152 279911 |
0.8 | 0 | f | 1 | ID=PAC:23126251;Name=Vocar20008359m;pacid=23126251;longest=1;Parent=Vocar20... | 1 | 0.66 | ||||||||
| Vocar20009035m.g | 1 | 280124 289886 |
9.8 | 15 | r | 1 | PF00497,PF10613,PF00060 PTHR18966 K05200 AT1G05200.1 ATGLR3.4,GLR3.4,GLUR... | 0 | 0 | ||||||||
| Vocar20009278m.g | 1 | 301326 305502 |
4.2 | 7 | r | 1 | PTHR10209 KOG0143 AT5G48020.1 2-oxoglutarate (2OG) and Fe(II)-dependent ... | 0.62 | 0.61 | ||||||||
| Vocar20009668m.g | 1 | 306292 313214 |
6.9 | 13 | f | 1 | PF00875,PF00561 PTHR10992 KOG1454 AT4G25290.1 DNA photolyases;DNA photol... | 0 | |||||||||
| Vocar20008335m.g | 1 | 314990 316131 |
1.1 | 1 | r | 1 | ID=PAC:23125065;Name=Vocar20008335m;pacid=23125065;longest=1;Parent=Vocar20... | 0.96 | 0.94 | ||||||||
| Vocar20009747m.g | 1 | 320680 321813 |
1.1 | 2 | r | 1 | PF00254 PTHR10516 KOG0544 5.2.1.8 K09568 AT3G25230.2 ATFKBP62,FKBP62,ROF1 r... | 1.16 | 1.02 | ||||||||
| Vocar20008223m.g | 1 | 323255 325914 |
2.7 | 5 | r | 1 | PF01121 PTHR10695 KOG3220 AT2G27490.1 ATCOAE dephospho-CoA kinase family... | 0 | |||||||||
| Vocar20009544m.g | 1 | 326383 329591 |
3.2 | 6 | f | 1 | PF00515,PF07719 PTHR23083 AT4G28600.1 NPGR2 no pollen germination relate... | 0 | |||||||||
| Vocar20009997m.g | 1 | 331375 335011 |
3.6 | 6 | r | 1 | PF04101 PTHR12867 KOG3349 2.4.1.141 K07432 AT4G16710.1 glycosyltransferase... | 0.7 | 0.66 | ||||||||
| Vocar20009239m.g | 1 | 350517 363353 |
12.8 | 15 | f | 1 | PF01946,PF01494,PF01266,PF00890,PF07992,PF01593,PF00355 PTHR23023 AT4G03... | 0 | |||||||||
| Vocar20009177m.g | 1 | 365625 375869 |
10.2 | 12 | f | 1 | ID=PAC:23125179;Name=Vocar20009177m;pacid=23125179;longest=1;Parent=Vocar20... | 0 | |||||||||
| Vocar20009022m.g | 1 | 377137 380118 |
3 | 4 | r | 1 | PF03188 PTHR10106 KOG1619 K08360 AT5G38630.1 ACYB-1,CYB-1 cytochrome B561-... | 0 | |||||||||
| Vocar20008874m.g | 1 | 381711 383201 |
1.5 | 1 | f | 1 | PF00173 PTHR19359 AT1G60660.1 ATCB5LP,B5 #5,CB5LP cytochrome B5-like pro... | 0.93 | 0.93 | ||||||||
| Vocar20009311m.g | 1 | 384658 390741 |
6.1 | 7 | r | 1 | PF00790 KOG1087 ... | 0.82 | 0.8 | ||||||||
| Vocar20009827m.g | 1 | 390753 393106 |
2.4 | 0 | f | 1 | PF01912 PTHR10784 KOG3185 K03264 AT3G55620.1 emb1624 Translation initiatio... | 1 | 1 | ||||||||
| Vocar20008691m.g | 1 | 392440 398100 |
5.7 | 5 | r | 1 | PF02214,PF08005 PTHR11145 AT5G55000.1 FIP2 potassium channel tetramerisa... | 0.62 | 0.59 | ||||||||
| Vocar20009726m.g | 1 | 393147 393998 |
0.9 | 0 | f | 1 | ID=PAC:23125992;Name=Vocar20009726m;pacid=23125992;longest=1;Parent=Vocar20... | 1 | 0.89 | ||||||||
| Vocar20009507m.g | 1 | 400583 404990 |
4.4 | 9 | r | 1 | PF06925,PF04101 PTHR21015 2.4.1.46 K03715 AT4G31780.2 MGD1,MGDA monogalact... | 0 | |||||||||
| Vocar20009348m.g | 1 | 408592 413852 |
5.3 | 7 | r | 1 | PTHR12270 ... | 0 | |||||||||
| Vocar20009817m.g | 1 | 415456 417554 |
2.1 | 4 | r | 1 | ID=PAC:23126373;Name=Vocar20009817m;pacid=23126373;longest=1;Parent=Vocar20... | 0.1 | 0.03 | ||||||||
| Vocar20009012m.g | 1 | 418258 420181 |
1.9 | 4 | r | 1 | ID=PAC:23126301;Name=Vocar20009012m;pacid=23126301;longest=1;Parent=Vocar20... | 0 | |||||||||
| Vocar20008292m.g | 1 | 421030 428986 |
8 | 11 | r | 1 | PF02636 AT1G04900.1 Protein of unknown function (DUF185)... | 0 | |||||||||
| Vocar20008968m.g | 1 | 431318 436318 |
5 | 8 | f | 1 | PF08241 PTHR13090 AT1G22800.1 S-adenosyl-L-methionine-dependent methylt... | 0 | |||||||||
| Vocar20009818m.g | 1 | 438370 441746 |
3.4 | 5 | r | 1 | PF02798,PF00043 PTHR11260 KOG0867 2.5.1.18 K00799 AT2G30860.2 ATGSTF7,ATGST... | 0.97 | 0.94 | ||||||||
| Vocar20008792m.g | 1 | 443676 454844 |
11.2 | 22 | r | 1 | PF09773 PTHR21274 ... | 0 | |||||||||
| Vocar20008618m.g | 1 | 455178 458440 |
3.3 | 5 | f | 1 | ID=PAC:23125999;Name=Vocar20008618m;pacid=23125999;longest=1;Parent=Vocar20... | 0.67 | 0.71 | ||||||||
| Vocar20009222m.g | 1 | 458736 461046 |
2.3 | 4 | r | 1 | PF00085,PF08534,PF00578 PTHR10438 ... | 0 | |||||||||
| Vocar20009624m.g | 1 | 461783 462946 |
1.2 | 0 | f | 1 | ID=PAC:23125564;Name=Vocar20009624m;pacid=23125564;longest=1;Parent=Vocar20... | 0 | |||||||||
| Vocar20009195m.g | 1 | 465691 471351 |
5.7 | 4 | r | 1 | PF08373 ... | 0.22 | 0.07 | ||||||||
| Vocar20009276m.g | 1 | 474046 482798 |
8.8 | 11 | r | 1 | PF00069,PF07714 PTHR23257 KOG0198 AT1G79570.1 Protein kinase superfamily... | 0 | |||||||||
| Vocar20009644m.g | 1 | 484625 488334 |
3.7 | 6 | r | 1 | ID=PAC:23124814;Name=Vocar20009644m;pacid=23124814;longest=1;Parent=Vocar20... | 0.96 | 0.94 | ||||||||
| Vocar20009312m.g | 1 | 490340 492545 |
2.2 | 3 | r | 1 | ID=PAC:23126329;Name=Vocar20009312m;pacid=23126329;longest=1;Parent=Vocar20... | 0 | |||||||||
| Vocar20009846m.g | 1 | 495450 502096 |
6.6 | 7 | r | 1 | ID=PAC:23126260;Name=Vocar20009846m;pacid=23126260;longest=1;Parent=Vocar20... | 0 | |||||||||
| Vocar20009350m.g | 1 | 503787 508244 |
4.5 | 3 | r | 1 | ID=PAC:23125798;Name=Vocar20009350m;pacid=23125798;longest=1;Parent=Vocar20... | 0 | |||||||||
| Vocar20009551m.g | 1 | 509619 511494 |
1.9 | 1 | f | 1 | ID=PAC:23124995;Name=Vocar20009551m;pacid=23124995;longest=1;Parent=Vocar20... | 0 | |||||||||
| Vocar20008374m.g | 1 | 512586 513345 |
0.8 | 0 | f | 1 | ID=PAC:23125413;Name=Vocar20008374m;pacid=23125413;longest=1;Parent=Vocar20... | 1 | 0.82 | ||||||||
| Vocar20008370m.g | 1 | 515829 516292 |
0.5 | 0 | f | 1 | ID=PAC:23125037;Name=Vocar20008370m;pacid=23125037;longest=1;Parent=Vocar20... | 1 | 0.75 | ||||||||
| Vocar20009813m.g | 1 | 518527 519043 |
0.5 | 0 | r | 1 | ID=PAC:23126087;Name=Vocar20009813m;pacid=23126087;longest=1;Parent=Vocar20... | 0.98 | 0.75 | ||||||||
| Vocar20009338m.g | 1 | 519244 528188 |
8.9 | 6 | r | 1 | ID=PAC:23126339;Name=Vocar20009338m;pacid=23126339;longest=1;Parent=Vocar20... | 0 | |||||||||
| Vocar20008366m.g | 1 | 543890 550131 |
6.2 | 10 | r | 1 | ID=PAC:23125890;Name=Vocar20008366m;pacid=23125890;longest=1;Parent=Vocar20... | 0 | |||||||||
| Vocar20008873m.g | 1 | 555794 557305 |
1.5 | 3 | f | 1 | ID=PAC:23125240;Name=Vocar20008873m;pacid=23125240;longest=1;Parent=Vocar20... | 0 | |||||||||
| Vocar20009162m.g | 1 | 558247 558833 |
0.6 | 1 | r | 1 | ID=PAC:23126327;Name=Vocar20009162m;pacid=23126327;longest=1;Parent=Vocar20... | 0 | |||||||||
| Vocar20009394m.g | 1 | 560696 562308 |
1.6 | 3 | r | 1 | ID=PAC:23126073;Name=Vocar20009394m;pacid=23126073;longest=1;Parent=Vocar20... | 0 | 0 | ||||||||
| Vocar20009372m.g | 1 | 563111 568495 |
5.4 | 7 | r | 1 | KOG0978 ... | 1 | 0.9 | ||||||||
| Vocar20008234m.g | 1 | 571964 575747 |
3.8 | 4 | f | 1 | ID=PAC:23125229;Name=Vocar20008234m;pacid=23125229;longest=1;Parent=Vocar20... | 0.74 | 0.52 | ||||||||
| Vocar20008768m.g | 1 | 578029 594475 |
16.4 | 24 | r | 1 | PTHR15137 K03128 AT1G73960.1 TAF2 TBP-associated factor 2... | 0.09 | 0.03 | ||||||||
| Vocar20009037m.g | 1 | 594844 597683 |
2.8 | 6 | r | 1 | PF04012 K03969 AT1G65260.1 PTAC4,VIPP1 plastid transcriptionally active ... | 1 | 0.97 | ||||||||
| Vocar20009569m.g | 1 | 597900 605947 |
8 | 14 | f | 1 | PTHR12526 2.4.1.241 K09480 AT3G11670.1 DGD1 UDP-Glycosyltransferase superf... | 0 | |||||||||
| Vocar20008412m.g | 1 | 608636 609412 |
0.8 | 0 | f | 1 | ID=PAC:23124872;Name=Vocar20008412m;pacid=23124872;longest=1;Parent=Vocar20... | 1 | 0.7 | ||||||||
| Vocar20009867m.g | 1 | 611036 612054 |
1 | 2 | r | 1 | PTHR13528 AT4G31460.1 Ribosomal L28 family... | 1 | 1 | ||||||||
| Vocar20008737m.g | 1 | 639900 641511 |
1.6 | 2 | r | 1 | PF07714 PTHR23256 AT1G04700.1 PB1 domain-containing protein tyrosine ki... | 0.89 | 0.92 | ||||||||
| Vocar20008248m.g | 1 | 673324 675458 |
2.1 | 1 | r | 1 | AT1G62780.1 ... | 1 | 0.96 | ||||||||
| Vocar20009998m.g | 1 | 680829 690626 |
9.8 | 15 | f | 1 | PF03423,PF08323,PF00534 PTHR12526 AT1G11720.2 ATSS3,SS3 starch synthase ... | 0 | |||||||||
| Vocar20008924m.g | 1 | 691937 693126 |
1.2 | 0 | r | 1 | PF00542 PTHR11809 KOG1715 K02935 AT3G27840.1 RPL12-B ribosomal protein L12... | 1 | 0.97 | ||||||||
| Vocar20009051m.g | 1 | 694216 697870 |
3.7 | 7 | r | 2 | ID=PAC:23125399;Name=Vocar20009051m;pacid=23125399;longest=1;Parent=Vocar20... | 1 | 0.97 | ||||||||
| Vocar20008583m.g | 1 | 698191 698754 |
0.6 | 0 | r | 1 | ID=PAC:23126139;Name=Vocar20008583m;pacid=23126139;longest=1;Parent=Vocar20... | 1 | 0.84 | ||||||||
| Vocar20009137m.g | 1 | 698781 701785 |
3 | 6 | r | 1 | PF04446 PTHR12729 KOG2721 2.7.7.- K10761 AT2G32320.2 tRNAHis guanylyltrans... | 0 | |||||||||
| Vocar20009680m.g | 1 | 702351 711855 |
9.5 | 2 | f | 1 | ID=PAC:23125835;Name=Vocar20009680m;pacid=23125835;longest=1;Parent=Vocar20... | 0 | |||||||||
| Vocar20009091m.g | 1 | 712328 716508 |
4.2 | 8 | f | 1 | PF10602,PF01399 PTHR14145 KOG0687 K03037 AT4G24820.1 26S proteasome, regu... | 1 | 0.98 | ||||||||
| Vocar20009904m.g | 1 | 718573 725012 |
6.4 | 2 | r | 1 | ID=PAC:23125237;Name=Vocar20009904m;pacid=23125237;longest=1;Parent=Vocar20... | 0.18 | 0.05 | ||||||||
| Vocar20008803m.g | 1 | 725775 729681 |
3.9 | 4 | f | 1 | ID=PAC:23125194;Name=Vocar20008803m;pacid=23125194;longest=1;Parent=Vocar20... | 0 | |||||||||
| Vocar20009897m.g | 1 | 730850 732745 |
1.9 | 4 | r | 1 | ID=PAC:23125649;Name=Vocar20009897m;pacid=23125649;longest=1;Parent=Vocar20... | 0 | |||||||||
| Vocar20009493m.g | 1 | 733204 735572 |
2.4 | 6 | f | 1 | PF00583,PF08445 PTHR23091 AT2G39000.3 Acyl-CoA N-acyltransferases (NAT)... | 0 | |||||||||
| Vocar20008717m.g | 1 | 738316 740353 |
2 | 3 | r | 1 | PF00097 PTHR22763 AT5G20910.1 AIP2 RING/U-box superfamily protein... | 0 | |||||||||
| Vocar20008715m.g | 1 | 742417 747344 |
4.9 | 8 | r | 1 | PF01546,PF07687 AT4G20070.1 AAH,ATAAH allantoate amidohydrolase... | 0 | |||||||||
| Vocar20008607m.g | 1 | 747702 751891 |
4.2 | 6 | f | 1 | PF03095 PTHR10012 KOG2867 AT4G08960.1 phosphotyrosyl phosphatase activat... | 0.7 | 0.66 | ||||||||
| Vocar20009192m.g | 1 | 752603 755817 |
3.2 | 2 | f | 1 | PF00651 PTHR23230 AT4G15840.1 BTB/POZ domain-containing protein... | 0 | |||||||||
| Vocar20009496m.g | 1 | 756700 759251 |
2.6 | 5 | r | 1 | PF07933 PTHR12847 KOG2500 AT3G58600.1 Adaptin ear-binding coat-associate... | 1 | 0.97 | ||||||||
| Vocar20009634m.g | 1 | 759737 763318 |
3.6 | 5 | r | 1 | PF00856 PTHR12197 AT1G26760.1 ATXR1,SDG35 SET domain protein 35... | 0.78 | 0.68 | ||||||||
| Vocar20008235m.g | 1 | 763258 769524 |
6.3 | 7 | f | 1 | PF04377 PTHR21367 2.3.2.8 K00685 AT5G05700.1 ATATE1,ATE1,DLS1 arginine-tRN... | 0.42 | 0.47 | ||||||||
| Vocar20008323m.g | 1 | 769433 770502 |
1.1 | 0 | r | 1 | ID=PAC:23126488;Name=Vocar20008323m;pacid=23126488;longest=1;Parent=Vocar20... | 1 | 0.81 | ||||||||
| Vocar20008672m.g | 1 | 770907 775871 |
5 | 10 | r | 1 | PF00534 PTHR12526 AT3G10630.1 UDP-Glycosyltransferase superfamily prote... | 0.65 | 0.56 | ||||||||
| Vocar20009593m.g | 1 | 776072 778158 |
2.1 | 3 | f | 1 | PF00005 PTHR12847 KOG2355 K12608 AT1G03905.1 P-loop containing nucleoside... | 0.76 | 0.92 |