What is GAEVAL? GAEVAL displays incongruencies in gene models, based on splice-aligned transcript evidence overlapping with a locus. GAEVAL data is categorized by the type of incongruency, for example alternative splicing. GAEVAL provides a good jumping-off place for gene annotation!
Quick Start: Click one of the categories listed in red below under "MOST WANTED! Annotations", to view a list of models flagged for that type. The data columns and evidence flags allow you to quickly assess the status of each gene model. Then click the URL "globe" link to view the gene model and its transcript alignments in a genome browser window. Now you can use the yrGATE tool to annotate the locus.
For more information: Go to the GAEVAL section of Annotation Help. For help annotating genes with yrGATE, visit yrGATE section of Annotation Help.
What do the symbols mean?
What does GAEVAL stand for? Gene Annotation EVALuation!
Display Options: Click the checkboxes to customize the columns that will display when you view a list of gene models. You can also specify column order using the dropdowns.
MOST WANTED! Annotations: This window displays all GAEVAL-flagged gene models by category (Alternative Splicing, Alternative Transcript Termination, Gene Fission,Gene Fusion, Erroneous Gene Overlap)
BEST OF SHOW! Annotations: This window displays gene models previously annotated by other yrGATE users, organized by category.
Annotation Filters: These checkboxes allow you to customize the display of gene models according to the criteria you set. After setting parameters as desired, click "Retrieve Annotations" at the top of the page to view your filtered list
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