Data Sets, Methods, and Resources:
About
is a -based genome encompassing primary sequence data from
Glycine max
.
The mapping of cDNA and EST sequences onto the genome as well as interpretations of the overall data are based on our own spliced alignment results. The information below summarizes the data sets and methods used for the selected version of GmGDB. To view a different genome version, select from the dropdown above.
For more information, visit our
Genome Browser Help
Genome Data
| Genome Type: | |
| Genome Source: | |
| Genome Assembly Version: | |
| Total Genome Segments: | |
| Masking Datasets: | |
Transcript Alignments
| EST- Total cognate alignments: | |
| EST Version: | |
| cDNA- Total cognate alignments: | |
| cDNA Version: | |
| PUT- Total alignments: | |
| PUT Version: | |
Alignment Methods
GeneSeqer
GeneSeqer is a gene identification tool based on spliced alignment or "spliced threading" of cDNAs/ESTs into a genomic DNA sequence template.
Splicing Model:
Parameters: -m 999999999 -x 30 -y 45 -z 60
m - maxnest
x - wordsize
y - minqHSP
z - minqHSPc
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Gene Models
| Total gene annotations: | | | Gene Model Version: | | | Total yrGATE Community Annotations: | 62 |
Protein Alignments
| Protein 1: () total count: | | | Protein 1 Version: | |
Alignment Methods
GenomeThreader, Version 1.0.8
GenomeThreader is a gene identification tool based on spliced alignment or "spliced threading" of cDNAs/ESTs or proteins into a genomic DNA sequence template
Splicing Model:
Parameters: Default
Probe
Alignment Methods
VMatch, Version 1.9
BLAST, Version 2.2.15
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