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Agrawal, A., Brendel, V. & Huang, X. (2008) Pairwise
statistical signifiance and Empirical Determination of Eefective
Ggp Opening Ppnalties for Protein Local Sequence Alignment.Int. J. of Computational Biol. and Drug Design, to
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Lushbough, C.M., Duvick, J, Dong, Q., Jennewein, D.,
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Query Tool for Relational Databases. In H.R. Arabnia, M.Q.
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Lushbough, C., Bergman, M.K., Lawrence, C.J., Jennewein, D.
& Brendel, V. (2008) BioExtract Server - an integrated
workflow-enabling system to access and analyze heterogeneous,
distributed biomolecular data.IEEE Transactions Comp. Biol.
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Lu, H., Patil, P., Van Sluys, M.-A., White, F.F., Ryan, R.P.,
Dow, J.M., Rabinowicz, P., Salzberg, S.L., Leach, J.E., Sonti, R.,
Brendel, V. & Bogdanove, A.J. (2008)
Acquisition and evolution of plant pathogenesis-associated gene
clusters and candidate determinants of tissue-specificity in
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Sparks, M.E. & Brendel, V. (2008) MetWAMer: eukaryotic
translation initiation site prediction.BMC
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Tasma, I.M., Brendel, V., Whitman, S.A. & Bhattacharyya,
M.K. (2008) Expression and evolution of the
phosphoinositide-specific phospholipase C gene family in
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statistical significance versus database statistical significance
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Wang, B.-B., O'Toole, M., Brendel, V. & Young, N.D. (2008)
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Duvick, J., Fu, A., Muppirala, U., Sabharwal, M., Wilkerson,
M.D., Lawrence, C.J., Lushbough, C. & Brendel, V. (2008)
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& Brendel, V. (2007)
Brendel, V., Kurtz, S. & Pan, X. (2007) Visualization of
syntenic relationships with SynBrowse. In N.H Bergman (ed.),
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Sparks, M.E., Brendel, V. & Dorman, K.S. (2007) Markov
model variants for appraisal of coding potential in plant DNA.
In I. Mandoiu & A. Zelikovsky (eds.), 2007 International
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Dong, Q., Wilkerson, M.D. & Brendel, V. (2007)
Tracembler - software for in silico chromosome walking in
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Schlueter S.D., Wilkerson M.D., Dong Q., & Brendel V.
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integrated evaluation and analysis of genome features.Genome Biol.7(11): R111. [PubMed
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Wilkerson, M.D., Schlueter, S.D. & Brendel, V. (2006)
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identification and dissemination of eukaryotic genes.Genome
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Gremme, G., Brendel, V., Sparks, M.E. & Kurtz, S. (2005)
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Brendel, V. (2005) Novel tools for plant genome annotation
and applications to Arabidopsis and rice. In J.P. Gustafson, R.
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Sparks, M.E. & Brendel, V. (2005) Incorporation of
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Dong, Q., Lawrence, C.J., Schlueter, S.D., Wilkerson, M.D.,
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plant genomics resources at PlantGDB.Plant Physiol.139, 610-618. [PubMed
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Pan, X., Stein, L. & Brendel, V. (2005) SynBrowse: a
synteny browser for comparative sequence analysis.Bioinformatics21, 3461-3468. [PubMed
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Lawrence, C.J., Seigfried, T.E. & Brendel, V. (2005)
MaizeGDB - the community resource for access to diverse maize
data. Plant Physiol. 138, 55-58. [PubMed
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Dong, Q., Kroiss, L., Oakley, F.D., Wang, B.-B. & Brendel,
V. (2005) Comparative EST analyses in plant systems. In
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Dong, Q. & Brendel, V. (2005) Computational
identification of related proteins: BLAST, PSI-BLAST, and other
tools. In J.M. Walker (ed.), The Proteomics Protocols
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Schlueter, S.D., Wilkerson, M.D., Huala, E., Rhee, S.Y. &
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Wang, B.-B. & Brendel, V. (2004) The ASRG database:
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Fernandes, J.F., Dong, Q., Schneider, B., Morrow, D.J., Nan,
G.-L., Brendel, V. & Walbot, V. (2004) Genome-wide
mutagenesis of Zea mays L. using RescueMu transposons.Genome Biol. 5, R82. [PubMed
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Brendel, V., Pan, X. & Sparks, M.E. (2004)
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Genomics, pp. 255-266. Am. Oil Chem. Soc. Press, Champaign, IL,
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Baran, S., Lawrence, C.J. & Brendel, V. (2004) PGROP - A
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Brendel, V., Xing, L. & Zhu, W. (2004) Gene structure
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Lawrence, C.J., Dong, Q., Polacco, M.L., Seigfried, T.E. &
Brendel, V. (2004) MaizeGDB, the community database for maize
genetics and genomics.Nucl. Acids Res. 32, D393-D397.
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Kalyanaraman, A., Aluru, S., Brendel, V. & Kothari, S.
(2003) Space and time efficient parallel algorithms and software
for EST clustering.IEEE Transactions on Parallel and
Distributed Systems 14, 1209-1221.
Dong,Q., Schlueter,S.D. and Brendel,V. (2004)
PlantGDB, plant genome database and analysis tools.
Nucleic Acids Res., 32, D354-D359.
Schlueter,S.D., Dong,Q. and Brendel,V. (2003)
GeneSeqer@PlantGDB: gene structure prediction in plant genomes.
Nucleic Acids Res., 31, 3597-3600.
Zhu,W. and Brendel,V. (2003)
Identification, characterization, and molecular phylogeny of U12-dependent introns in the Arabidopsis thaliana genome.
Nucleic Acids Res., 31, 4561-4572.
Zhu,W., Schlueter,S.D. and Brendel,V. (2003)
Refined annotation of the Arabidopsis thaliana genome by complete EST mapping.
Plant Physiology, 132, 469-484.
