Repeat Match

PlantGDB uses the Vmatch program (with options -d -p -l 100 -exdrop 2 -identity 80) to screen EST sequences against TIGR Plant Repeat Database. The table below summarizes the total count of "repeats". Clicking on the count will browse the individual repeat-containing sequence. Because it is very difficult to correctly assemble repeat-containing ESTs, they are excluded from PlantGDB EST assembly.

To view a list of sequences flagged as repeat containing, click on the number in the "Sequence Count" column.

Organism:

Organism	Type	Sequence Count
Acacia_auriculiformis_x_Acacia_mangium	Repeat	5
Acacia_mangium	Repeat	3
Acanthus_ebracteatus	Repeat	3
Acetabularia_acetabulum	Repeat	2
Acorus_americanus	Repeat	11
Actaea_racemosa	Repeat	31
Actinidia_arguta	Repeat	21
Actinidia_chinensis	Repeat	123
Actinidia_deliciosa	Repeat	554
Actinidia_eriantha	Repeat	51
Actinidia_hemsleyana	Repeat	12
Actinidia_polygama	Repeat	2
Actinidia_setosa	Repeat	3
Adiantum_capillus_veneris	Repeat	228
Adonis_aestivalis	Repeat	24
Aegiceras_corniculatum	Repeat	3
Aegilops_speltoides	Repeat	17
Aegilops_tauschii	Repeat	27
Aeluropus_lagopoides	Repeat	7
Aeluropus_littoralis	Repeat	5
Agapanthus_praecox_subsp__orientalis	Repeat	5
Agrostis_capillaris	Repeat	11
Agrostis_stolonifera	Repeat	114
Agrostis_stolonifera_var__palustris	Repeat	1
Allium_cepa	Repeat	33
Allium_sativum	Repeat	1
Alnus_glutinosa	Repeat	161
Alstroemeria_peruviana	Repeat	11
Amborella_trichopoda	Repeat	26
Ambrosia_trifida	Repeat	1
Ananas_comosus	Repeat	5
Andrographis_paniculata	Repeat	1
Antirrhinum_majus	Repeat	53
Apium_graveolens	Repeat	2
Apium_graveolens_Dulce_Group	Repeat	3
Aquilegia_formosa_x_Aquilegia_pubescens	Repeat	165
Arabidopsis_arenosa_x_Arabidopsis_thaliana	Repeat	4
Arabidopsis_halleri_subsp__halleri	Repeat	3
Arabidopsis_lyrata	Repeat	4
Arabidopsis_thaliana	Repeat	7520
Arachis_duranensis	Repeat	37
Arachis_hypogaea	Repeat	436
Arachis_hypogaea_subsp__fastigiata	Repeat	3
Arachis_ipaensis	Repeat	25
Arachis_stenosperma	Repeat	11
Aristolochia_fimbriata	Repeat	27
Arnebia_euchroma	Repeat	31
Artemisia_annua	Repeat	709
Asparagus_officinalis	Repeat	42
Astragalus_racemosus	Repeat	2
Atriplex_centralasiatica	Repeat	43
Avena_barbata	Repeat	49
Avena_sativa	Repeat	83
Avicennia_marina	Repeat	19
Barnadesia_spinosa	Repeat	41
Beta_vulgaris	Repeat	101
Beta_vulgaris_subsp__vulgaris	Repeat	11
Betula_platyphylla	Repeat	230
Bienertia_sinuspersici	Repeat	3
Bixa_orellana	Repeat	67
Boehmeria_nivea	Repeat	7
Botryococcus_braunii	Repeat	42
Bouteloua_gracilis	Repeat	24
Brachiaria_mixed_EST_library	Repeat	1
Brachypodium_distachyon	Repeat	270
Brassica_carinata	Repeat	70
Brassica_juncea	Repeat	60
Brassica_napus	Repeat	20611
Brassica_nigra	Repeat	23
Brassica_oleracea	Repeat	103
Brassica_oleracea_var__acephala	Repeat	49
Brassica_oleracea_var__alboglabra	Repeat	48
Brassica_oleracea_var__botrytis	Repeat	1
Brassica_oleracea_var__italica	Repeat	13
Brassica_rapa	Repeat	2858
Brassica_rapa_subsp__chinensis	Repeat	6
Brassica_rapa_subsp__pekinensis	Repeat	726
Bruguiera_cylindrica	Repeat	6
Bruguiera_gymnorhiza	Repeat	34
Cabomba_aquatica	Repeat	13
Cajanus_cajan	Repeat	1641
Cajanus_scarabaeoides	Repeat	1
Camellia_sinensis	Repeat	62
Camellia_sinensis_var__assamica	Repeat	391
Camellia_sinensis_var__sinensis	Repeat	2
Cannabis_sativa	Repeat	157
Capsicum_annuum	Repeat	707
Capsicum_frutescens	Repeat	7
Carica_papaya	Repeat	67
Carthamus_tinctorius	Repeat	4
Carya_illinoinensis	Repeat	7
Castanea_mollissima	Repeat	5
Castanea_sativa	Repeat	2
Castanopsis_sieboldii	Repeat	38
Casuarina_glauca	Repeat	1149
Catharanthus_roseus	Repeat	103
Cenchrus_americanus	Repeat	120
Cenchrus_americanus_x_Cenchrus_orientalis	Repeat	1
Cenchrus_ciliaris	Repeat	94
Centaurea_maculosa	Repeat	16