Repeat Match

PlantGDB uses the Vmatch program (with options -d -p -l 100 -exdrop 2 -identity 80) to screen EST sequences against TIGR Plant Repeat Database. The table below summarizes the total count of "repeats". Clicking on the count will browse the individual repeat-containing sequence. Because it is very difficult to correctly assemble repeat-containing ESTs, they are excluded from PlantGDB EST assembly.

To view a list of sequences flagged as repeat containing, click on the number in the "Sequence Count" column.

Organism:

Organism	Type	Sequence Count
Centaurea_solstitialis	Repeat	12
Centella_asiatica	Repeat	5
Ceratonia_siliqua	Repeat	2
Ceratopteris_richardii	Repeat	29
Ceriops_tagal	Repeat	1
Chamaecyparis_formosensis	Repeat	5
Chenopodium_album	Repeat	8
Chenopodium_quinoa	Repeat	1
Chimonanthus_praecox	Repeat	2
Chlamydomonas_incerta	Repeat	27
Chlamydomonas_reinhardtii	Repeat	99
Chlamydomonas_sp__CCMP681	Repeat	2
Chlamydomonas_sp__HS_5	Repeat	10
Chlamydomonas_sp__W80	Repeat	2
Chlorella_vulgaris	Repeat	1
Chloris_virgata	Repeat	8
Chrysanthemum_x_morifolium	Repeat	64
Cicer_arietinum	Repeat	2484
Cicer_microphyllum	Repeat	1
Cichorium_endivia	Repeat	6
Cichorium_intybus	Repeat	41
Cistus_creticus_subsp__creticus	Repeat	42
Cistus_incanus	Repeat	1
Citrullus_lanatus	Repeat	25
Citrullus_lanatus_subsp__vulgaris	Repeat	4
Citrus_aurantiifolia	Repeat	4
Citrus_aurantium	Repeat	9
Citrus_clementina	Repeat	313
Citrus_jambhiri	Repeat	2
Citrus_japonica_var__margarita	Repeat	4
Citrus_latifolia	Repeat	2
Citrus_limettioides	Repeat	3
Citrus_limon	Repeat	10
Citrus_limonia	Repeat	1
Citrus_macrophylla	Repeat	2
Citrus_natsudaidai	Repeat	1
Citrus_nobilis_x_Citrus_kinokuni	Repeat	1
Citrus_reshni	Repeat	2
Citrus_reticulata	Repeat	89
Citrus_reticulata_x_Citrus_temple	Repeat	13
Citrus_sinensis	Repeat	509
Citrus_sinensis_x_Citrus_reticulata	Repeat	3
Citrus_sinensis_x_Citrus_trifoliata	Repeat	8
Citrus_tamurana	Repeat	2
Citrus_trifoliata	Repeat	125
Citrus_unshiu	Repeat	167
Citrus_x_paradisi	Repeat	13
Cleistogenes_songorica	Repeat	5
Cleome_spinosa	Repeat	3
Closterium_peracerosum_strigosum_littorale_complex	Repeat	4
Codonopsis_lanceolata	Repeat	7
Coffea_arabica	Repeat	630
Coffea_arabica_x_Coffea_canephora	Repeat	2
Coffea_canephora	Repeat	102
Coffea_racemosa	Repeat	7
Coleochaete_orbicularis	Repeat	11
Coleochaete_scutata	Repeat	1479
Colocasia_esculenta	Repeat	1
Coptis_japonica_var__dissecta	Repeat	3
Corchorus_capsularis	Repeat	77
Costus_pulverulentus_x_Costus_scaber	Repeat	5
Crocus_sativus	Repeat	21
Cryptomeria_japonica	Repeat	295
Cucumis_melo	Repeat	328
Cucumis_melo_subsp__agrestis	Repeat	2
Cucumis_melo_subsp__melo	Repeat	24
Cucumis_melo_x_Cucurbita_moschata	Repeat	6
Cucumis_sativus	Repeat	102
Curcuma_longa	Repeat	29
Cyamopsis_tetragonoloba	Repeat	7
Cycas_rumphii	Repeat	16
Cymbidium_grandiflorum	Repeat	4
Cynara_cardunculus_var__scolymus	Repeat	3
Cynodon_dactylon	Repeat	1084
Cynodon_x_magennisii	Repeat	4
Dactylis_glomerata	Repeat	119
Daucus_carota_subsp__sativus	Repeat	29
Dendrocalamus_latiflorus	Repeat	43
Dendrocalamus_sinicus	Repeat	4
Deschampsia_antarctica	Repeat	60
Descurainia_sophia	Repeat	14
Dianthus_caryophyllus	Repeat	3
Dioscorea_alata	Repeat	46
Diospyros_kaki	Repeat	6
Dunaliella_salina	Repeat	25
Elaeis_guineensis	Repeat	88
Elaeis_oleifera	Repeat	3
Eleusine_coracana	Repeat	23
Eleusine_coracana_subsp__africana	Repeat	5
Eleusine_coracana_subsp__coracana	Repeat	3
Eleutherococcus_sessiliflorus	Repeat	408
Elsholtzia_splendens	Repeat	1
Elymus_wawawaiensis_Elymus_lanceolatus_mixed_EST_library	Repeat	70
Epipremnum_aureum	Repeat	1
Eragrostis_curvula	Repeat	482
Eragrostis_pilosa	Repeat	3
Eragrostis_tef	Repeat	5
Eschscholzia_californica	Repeat	58
Eucalyptus_globulus	Repeat	22
Eucalyptus_globulus_subsp__bicostata	Repeat	19