Repeat Match

PlantGDB uses the Vmatch program (with options -d -p -l 100 -exdrop 2 -identity 80) to screen EST sequences against TIGR Plant Repeat Database. The table below summarizes the total count of "repeats". Clicking on the count will browse the individual repeat-containing sequence. Because it is very difficult to correctly assemble repeat-containing ESTs, they are excluded from PlantGDB EST assembly.

To view a list of sequences flagged as repeat containing, click on the number in the "Sequence Count" column.

Organism:

Organism	Type	Sequence Count
Eucalyptus_grandis	Repeat	6
Eucalyptus_gunnii	Repeat	192
Euonymus_alatus	Repeat	48
Euphorbia_esula	Repeat	80
Euphorbia_tirucalli	Repeat	1
Eustoma_exaltatum_subsp__russellianum	Repeat	1
Eutrema_halophilum	Repeat	61
Eutrema_salsugineum	Repeat	13
Fagopyrum_esculentum	Repeat	4
Fagopyrum_tataricum	Repeat	3
Fagus_sylvatica	Repeat	50
Festuca_arundinacea	Repeat	442
Festuca_pratensis	Repeat	359
Festuca_rubra_subsp__commutata	Repeat	11
Ficus_elastica	Repeat	4
Fragaria_chiloensis	Repeat	1
Fragaria_vesca	Repeat	933
Fragaria_x_ananassa	Repeat	45
Fraxinus_excelsior	Repeat	164
Fritillaria_cirrhosa	Repeat	163
Garcinia_mangostana	Repeat	2
Gerbera_hybrid_cultivar	Repeat	860
Ginkgo_biloba	Repeat	75
Glycine_clandestina	Repeat	42
Glycine_max	Repeat	1587
Glycine_soja	Repeat	136
Glycyrrhiza_uralensis	Repeat	130
Gnetum_gnemon	Repeat	30
Gossypium_arboreum	Repeat	342
Gossypium_barbadense	Repeat	470
Gossypium_hirsutum	Repeat	2308
Gossypium_raimondii	Repeat	285
Grimmia_pilifera	Repeat	75
Guizotia_abyssinica	Repeat	31
Haematococcus_pluvialis	Repeat	12
Hedyotis_terminalis	Repeat	12
Helianthus_annuus	Repeat	561
Helianthus_argophyllus	Repeat	14
Helianthus_ciliaris	Repeat	4
Helianthus_exilis	Repeat	4
Helianthus_paradoxus	Repeat	6
Helianthus_petiolaris	Repeat	19
Helianthus_tuberosus	Repeat	13
Helicosporidium_sp__ex_Simulium_jonesi	Repeat	23
Hevea_brasiliensis	Repeat	66
Hibiscus_cannabinus	Repeat	1
Hieracium_piloselloides	Repeat	3
Hordeum_brevisubulatum	Repeat	3
Hordeum_vulgare	Repeat	1225
Hordeum_vulgare_subsp__spontaneum	Repeat	70
Hordeum_vulgare_subsp__vulgare	Repeat	7975
Humulus_lupulus	Repeat	1377
Huperzia_serrata	Repeat	250
Hydrilla_verticillata	Repeat	2
Hyoscyamus_niger	Repeat	1
Hypericum_hookerianum	Repeat	1
Ipomoea_batatas	Repeat	132
Ipomoea_nil	Repeat	179
Ipomoea_trifida	Repeat	2
Ipomopsis_aggregata	Repeat	11
Iris_brevicaulis	Repeat	10
Iris_fulva	Repeat	6
Iris_x_hollandica	Repeat	2
Isoetes_lacustris	Repeat	4
Jatropha_curcas	Repeat	2018
Juglans_hindsii_x_Juglans_regia	Repeat	110
Juglans_regia	Repeat	14
Kadua_centranthoides	Repeat	7
Kalanchoe_daigremontiana	Repeat	1
Kalanchoe_x_houghtonii	Repeat	3
Kalidium_foliatum	Repeat	17
Karelinia_caspia	Repeat	9
Klebsormidium_subtile	Repeat	462
Knorringia_sibirica	Repeat	47
Krascheninnikovia_lanata	Repeat	1
Lablab_purpureus	Repeat	2
Lactuca_perennis	Repeat	29
Lactuca_saligna	Repeat	131
Lactuca_sativa	Repeat	121
Lactuca_serriola	Repeat	134
Lactuca_virosa	Repeat	56
Larix_gmelinii	Repeat	12
Lathyrus_odoratus	Repeat	8
Lens_culinaris	Repeat	30
Lepidium_sativum	Repeat	1
Leymus_chinensis	Repeat	11
Leymus_cinereus_x_Leymus_triticoides	Repeat	137
Leymus_mollis	Repeat	8
Lilium_davidii_var__willmottiae	Repeat	1
Lilium_formosanum	Repeat	18
Lilium_hybrid_division_VII	Repeat	3
Limnanthes_alba	Repeat	32
Limonium_bicolor	Repeat	18
Limonium_sinense	Repeat	10
Linum_usitatissimum	Repeat	5647
Liriodendron_tulipifera	Repeat	14
Lolium_multiflorum	Repeat	39
Lolium_perenne	Repeat	26
Lolium_temulentum	Repeat	45
Lotus_japonicus	Repeat	1140