Help
Feedback
PlantGDB Site Search
Sequence ID
Sequence Keyword
at PlantGDB
Home
Sequence
-Overview -
Download
Search
-Overview-
Select Species...
Arabidopsis thaliana
Brassica napus
Brassica oleracea
Chlamydomonas reinhardtii
Cucumis sativus
Glycine max
Gossypium hirsutum
Hordeum vulgare
Medicago truncatula
Oryza sativa
Physcomitrella patens
Setaria italica
Sorghum bicolor
Triticum aestivum
Vitis vinifera
Zea mays
EST Assemb
-Overview -
Select Species...
Arabidopsis thaliana
Brassica napus
Brassica oleracea
Chlamydomonas reinhardtii
Cucumis sativus
Glycine max
Gossypium hirsutum
Hordeum vulgare
Medicago truncatula
Oryza sativa
Physcomitrella patens
Setaria italica
Sorghum bicolor
Triticum aestivum
Vitis vinifera
Zea mays
GSS Assemb
FTP Server
Genomes
-Overview-
Dicots
AtGDB
- Arabidopsis thaliana
BrGDB
- Brassica rapa
CpGDB
- Carica papaya
CsGDB
- Cucumis sativus
GhGDB
- Gossypium hirsutum
GmGDB
- Glycine max
LjGDB
- Lotus japonicus
MeGDB
- Manihot esculenta
MtGDB
- Medicago truncatula
MgGDB
- Mimulus guttatus
PeGDB
- Prunus persica
PtGDB
- Populus trichocarpa
RcGDB
- Ricinus communis
SlGDB
- Solanum lycopersicum
StGDB
- Solanum tuberosum
VvGDB
- Vitis vinifera
Monocots
BdGDB
- Brachypodium distachyon
HvGDB
- Hordeum vulgare
OsGDB
- Oryza sativa
SbGDB
- Sorghum bicolor
SiGDB
- Setaria italica
TaGDB
- Triticum aestivum
ZmGDB
- Zea mays
Other
CrGDB
- Chlamydomonas reinhardtii
PpGDB
- Physcomitrella patens
SmGDB
- Selaginella moellendorffii
VcGDB
- Volvox carteri
Tools
-Overview-
BioExtract
BLAST
DAS
GeneSeqer
GenomeThreader
MuSeqBox
PatternSearch
ProbeMatch
TE nest
yrGATE
Datasets
- Overview -
ASIP
PLEXdb
RescueMu
RFLP/FLIS
SRGD
UniformMu
Outreach
Plant Genome Outreach Portal (PGROP)
Outreach to Native Americans
Help
Help
Community Annotation
Genome Browsers
TableMaker
Tutorials
Annotation Tutorial
Annotation Lessons
GeneSeqer Tutorial
About Us
News
Tour
F.A.Q.
Site Map
Publications
Links
Acknowledgments
Search
Chromosome/BAC
Gene name
EST/cDNA gi
Annotation
for
In
Medicago
Lotus
Arabidopsis
Rice
Brassica rapa
Physcomitrella patens
Populus trichocarpa
Sorghum bicolor
Glycine max
Vitis vinifera
Brachypodium distachyon
Gossypium hirsutum
Hordeum vulgare
Solanum lycopersicum
Triticum aesticum
ASIP Selection
A tree for site navigation will open here if you enable JavaScript in your browser.
Alternative splicing visualization tool...
Enter DB
Tools
Tutorials
Publications
Methods
Download
Contacts
Available Data for
Wang and Brendel, PNAS, 2006
Type
Species
Data Set
Single Species
Arabidopsis
echo "
Alternative Donor site
Alternative Acceptor site
Alternative Position (both site)
Exon Skipping
Intron Retention
Possibly non-independent AS events
"; ?>
Rice
echo"
Alternative Donor site
Alternative Acceptor site
Alternative Position (both site)
Exon Skipping
Intron Retention
Possibly non-independent AS events
" ; ?>
Conserved AltS
(Arabidopsis and Rice)
Homologous genes
/Sintron.cgi?Table=ATaltOS&DB=ASIP&SItype=AltD">Alternative Donor site
/Sintron.cgi?&DB=&Table=ATaltOS&DB=ASIP&SItype=AltA">Alternative Acceptor site
/Sintron.cgi?Table=ATaltOS&DB=ASIP&SItype=AltP">Alternative Position (both site)
/Sintron.cgi?Table=ATaltOS&DB=ASIP&SItype=ExonS">Exon Skipping
/Sintron.cgi?Table=ATaltOS&DB=ASIP&SItype=IntronR">Intron Retention
/Sintron.cgi?Table=ConsASevents&DB=ASIP">Events
/Sintron.cgi?Table=ConsASevents&DB=ASIP&SItype=AltD">Alternative Donor site
/Sintron.cgi?&Table=ConsASevents&DB=ASIP&SItype=AltA">Alternative Acceptor site
/Sintron.cgi?Table=ConsASevents&DB=ASIP&SItype=AltP">Alternative Position (both site)
/Sintron.cgi?Table=ConsASevents&DB=ASIP&SItype=ExonS">Exon Skipping
/Sintron.cgi?Table=ConsASevents&DB=ASIP&SItype=IntronR">Intron Retention
Loading Help Page...Thanks for your patience!
Loading Video...Thanks for your patience!
Loading Image...Thanks for your patience!