Alternative splicing visualization tool...

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Current Data in ASIP

Type	Species	Data Set from common or individual alignments
Aug. 1, 2010	Lotus japonicus	Alternative Donor site Alternative Acceptor site Alternative Position (both site) Exon Skipping Intron Retention
	Medicago truncatula	Alternative Donor site Alternative Acceptor site Alternative Position (both site) Exon Skipping Intron Retention
	Arabidopsis thaliana	Alternative Donor site Alternative Acceptor site Alternative Position (both site) Exon Skipping Intron Retention
	Oryza sativa	Alternative Donor site Alternative Acceptor site Alternative Position (both site) Exon Skipping Intron Retention
	Brassica rapa	Alternative Donor site Alternative Acceptor site Alternative Position (both site) Exon Skipping Intron Retention
	Physcomitrella patens	Alternative Donor site Alternative Acceptor site Alternative Position (both site) Exon Skipping Intron Retention
	Populus trichocarpa	Alternative Donor site Alternative Acceptor site Alternative Position (both site) Exon Skipping Intron Retention
	Sorghum bicolor	Alternative Donor site Alternative Acceptor site Alternative Position (both site) Exon Skipping Intron Retention
	Glycine max GM163	Alternative Donor site Alternative Acceptor site Alternative Position (both site) Exon Skipping Intron Retention
	Vitis vinifera	Alternative Donor site Alternative Acceptor site Alternative Position (both site) Exon Skipping Intron Retention
	Brachypodium distachyon	Alternative Donor site Alternative Acceptor site Alternative Position (both site) Exon Skipping Intron Retention
	Gossypium hirsutum	Alternative Donor site Alternative Acceptor site Alternative Position (both site) Exon Skipping Intron Retention
	Hordeum vulgare	Alternative Donor site Alternative Acceptor site Alternative Position (both site) Exon Skipping Intron Retention
	Solanum lycopersicum	Alternative Donor site Alternative Acceptor site Alternative Position (both site) Exon Skipping Intron Retention
	Triticum aesticum	Alternative Donor site Alternative Acceptor site Alternative Position (both site) Exon Skipping Intron Retention
Data jointly contributed by Medicago Genome Sequencing project and PlantGDB June 30, 2007	Medicago Mt1.0 Non-redundant genes	Alternative Donor site; GeneSeqer GMAP Alternative Acceptor site; GeneSeqer GMAP Alternative Position (both site); GeneSeqer GMAP Exon Skipping; GeneSeqer GMAP Intron Retention; GeneSeqer GMAP
	Lotus Phase 3 BACs	Alternative Donor site; GeneSeqer GMAP Alternative Acceptor site; GeneSeqer GMAP Alternative Position (both site); GeneSeqer GMAP Exon Skipping; GeneSeqer GMAP Intron Retention; GeneSeqer GMAP
	Arabidopsis TAIR-V6	Alternative Donor site; GeneSeqer GMAP Alternative Acceptor site; GeneSeqer GMAP Alternative Position (both site); GeneSeqer GMAP Exon Skipping; GeneSeqer GMAP Intron Retention; GeneSeqer GMAP
	Rice TIGR-V4 Japonica subspecies only	Alternative Donor site; GeneSeqer GMAP Alternative Acceptor site; GeneSeqer GMAP Alternative Position (both site); GeneSeqer GMAP Exon Skipping; GeneSeqer GMAP Intron Retention; GeneSeqer GMAP
	Medicago & Lotus Conserved AS events	Alternative Donor site; GeneSeqer GMAP Alternative Acceptor site; GeneSeqer GMAP Alternative Position (both site); GeneSeqer GMAP Exon Skipping; GeneSeqer GMAP Intron Retention; GeneSeqer GMAP
	Medicago & Legumes Cross species EST identified AS events	Alternative Donor site; Lotus Soybean Others Alternative Acceptor site; Lotus Soybean Others Alternative Position; Lotus Soybean Others Exon Skipping; Lotus Soybean Others Intron Retention; Lotus Soybean Others
Sept. 1, 2006	Arabidopsis TAIR-V6 GenBank release 152	Alternative Donor site Alternative Acceptor site Alternative Position (both site) Exon Skipping Intron Retention
Sept. 1, 2006	Rice TIGR-V4 GenBank release 151	Alternative Donor site Alternative Acceptor site Alternative Position (both site) Exon Skipping Intron Retention
Old data described in Wang and Brendel, PNAS, 2006, available online.

Alternative splicing visualization tool...

Current Data in ASIP

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