Genome Browsers ![]( "Sequence Record View Help")
High quality spliced alignments to transcripts and proteins, gene models and community annotation.
For plant species with ongoing genome sequencing projects, PlantGDB provides genome browsers to display current gene structure models and transcript evidence from spliced alignments of EST and cDNA sequences. The browsers also link community annotation tools to contribute refined or novel annotations. Other features we display, if applicable, include matched GSS contigs, similar proteins, as well as microarray probes.
Click on an icon ( 
, 
, etc.) to view a specific data type or tool for that genome.
| Genome Browser (click to view Genome Home Page) |
Species Name |
Type | GenBank Version |
Home Page |
Sample Region |
Data Sources & Methods |
Data Down- load |
Search | BLAST | Loci / Anno- tation Table |
Commu- nity Anno- tations |
GAEVAL Tables |
Protein Spliced-Alignments |
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| AtGDB | Arabidopsis thaliana (Thale Cress) | Chromosome | 171 |  |
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Rice |
| BdGDB | Brachypodium distachyon (Brachypodium) | Chromosome | 179 | |
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Rice, Sorghum |
| BrGDB | Brassica rapa (Mustard) | Chromosome | 187 | |
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Arabidopsis |
| CpGDB | Carica papaya (Papaya) | Scaffold | 181 | |
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Arabidopsis |
| CrGDB | Chlamydomonas reinhardtii (Chlamydomonas) | Chromosome | 179 | |
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Arabidopsis, Medicago |
| CsGDB | Cucumis sativus (Cucumber) | Scaffold | 179 | |
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Arabidopsis, Medicago |
| GhGDB | Gossypium hirsutum (Cotton) | BAC | 154 | |
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Arabidopsis |
| GmGDB (Chromosome) |
Glycine max (Soybean) | Chromosome | 181 | |
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Arabidopsis, Medicago |
| GmGDB (BAC/Scaffold) |
Glycine max (Soybean) | BAC/Scaffold | 163 | |
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Arabidopsis, Medicago |
| HvGDB | Hordeum vulgare (Barley) | BAC | 157 | |
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Rice |
| LjGDB | Lotus japonicus (Lotus) | Chromosome | 171 | |
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Arabidopsis |
| MeGDB | Manihot esculenta (Cassava) | Scaffold | 187 | |
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Arabidopsis |
| MgGDB | Mimulus guttatus (Mimulus) | Scaffold | 179 | |
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Arabidopsis |
| MtGDB | Medicago truncatula (Barrel medic) | Chromosome | 187 | |
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Arabidopsis |
| OsGDB | Oryza sativa (Rice) | Chromosome | 187 | |
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Arabidopsis, Sorghum |
| PpGDB | Physcomitrella patens (Moss) | Scaffold | 183 | |
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Arabidopsis, Rice |
| RcGDB | Ricinus communis (Ricinus) | Scaffold | 179 | |
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Arabidopsis |
| PeGDB | Prunus persica (Peach) | Scaffold | 179 | |
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Arabidopsis |
| PtGDB | Populus trichocarpa (Poplar) | Chromosome | 179 | |
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Arabidopsis |
| SbGDB | Sorghum bicolor (Sorghum) | Chromosome | 181 | |
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Rice |
| SiGDB | Setaria italica (Foxtail millet) | Scaffold | 187 | |
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Sorgum, Rice |
| SlGDB | Solanum lycopersicum (Tomato) | BAC | 160 | |
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Arabidopsis |
| StGDB | Solanum tuberosum (Potato) | Chromosome | 187 | |
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Arabidopsis, Medicago |
| SmGDB | Selaginella moellendorffii (Spike Moss) | Scaffold | 179 | |
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Arabidopsis, Medicago |
| TaGDB | Triticum aestivum (Wheat) | BAC | 175 | |
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Arabidopsis |
| VcGDB | Volvox carteri (Volvox carteri) | Scaffold | 187 | |
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Arabidopsis, Medicago |
| VvGDB | Vitis vinifera (Wine Grape) | Chromosome | 179 | |
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Arabidopsis |
| ZmGDB (Chromosome) |
Zea mays (maize) | Chromosome | 181 | |
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Rice, Sorghum |
| ZmGDB (BAC) |
Zea mays (maize) | BAC | 157(U) | |
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Rice, Sorghum |